PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G091500.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MIKC_MADS
Protein Properties Length: 186aa    MW: 21530.1 Da    PI: 9.7467
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G091500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.48.8e-241056248
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                          +ien   rqvtf+kRr g+lKKA+ELSvLCda + vi++s++gk+y+
  Sobic.006G091500.2.p 10 KIENPVHRQVTFCKRRMGLLKKAKELSVLCDAAIGVIVISPHGKIYD 56
                          69*******************************************97 PP
2K-box57.75.1e-2077175498
                 K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGe....dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                           + g+s +++k++  +qe+  L +ei+ Lq+  R + Ge    d++ ++l eLq Le++Le  +++iRs+K++++ ++ie l++ke +lq
  Sobic.006G091500.2.p  77 RPGESSNHNKTQIIKQEVLALTREIDLLQKGFRYMHGEnvenDINHMNLDELQTLENNLEMWVNSIRSQKMQIISREIEMLRNKEAMLQ 165
                           5566788999***************************955556899******************************************* PP

                 K-box  89 eenkaLrkkl 98 
                             n  L++++
  Sobic.006G091500.2.p 166 AVNGVLQERV 175
                           ***9998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.53E-26174IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.88161IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-32160IPR002100Transcription factor, MADS-box
CDDcd002651.34E-34273No hitNo description
PRINTSPR004046.0E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-243859IPR002100Transcription factor, MADS-box
PfamPF014866.9E-2481175IPR002487Transcription factor, K-box
PROSITE profilePS5129712.95187181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MARGKVQMRK IENPVHRQVT FCKRRMGLLK KAKELSVLCD AAIGVIVISP HGKIYDLATN  60
GNMQGLIERY RRTYSERPGE SSNHNKTQII KQEVLALTRE IDLLQKGFRY MHGENVENDI  120
NHMNLDELQT LENNLEMWVN SIRSQKMQII SREIEMLRNK EAMLQAVNGV LQERVLQICM  180
SFPFF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G091500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9761310.0EU976131.1 Zea mays clone 645550 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319583.11e-126MADS-box transcription factor 26
SwissprotA2YQK95e-64MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G85e-64MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A1B6PL241e-135A0A1B6PL24_SORBI; Uncharacterized protein
STRINGSb06g017660.11e-124(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-53AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]