PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G089500.1.p
Common NameSb06g017490, SORBIDRAFT_06g017490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 662aa    MW: 73201.8 Da    PI: 6.0562
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G089500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-24129229198
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++ +++aee+      +++++++ +l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F+
  Sobic.006G089500.1.p 129 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSLNPPCQ-ELVAKDLHGTEWHFRHIFRGQPKRHLLTTGWSVFVSSKRLVAGDAFIFM 216
                           99*****************************99999886.9************************************************ PP

                           E-SSSEE..EEEEE- CS
                    B3  84 ldgrsefelvvkvfr 98 
                             + +++el+v+v+r
  Sobic.006G089500.1.p 217 --RGENGELRVGVRR 229
                           ..449999*****97 PP
2Auxin_resp100.91.7e-33255340183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                           a+ha+st++ F+v+Y+Pr+s+s+F+v+v+k+++a k+k+svGmRfkm+fe+++++err+sGt++g+     ++ + W +S WrsLk
  Sobic.006G089500.1.p 255 ASHAISTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKQKISVGMRFKMRFEGDEAPERRFSGTIIGIGSlpaMSKSLWADSDWRSLK 340
                           789**************************************************************98622266778********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-43114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-40126244IPR015300DNA-binding pseudobarrel domain
CDDcd100179.29E-22127229No hitNo description
PROSITE profilePS5086311.66129231IPR003340B3 DNA binding domain
PfamPF023627.5E-22129229IPR003340B3 DNA binding domain
SMARTSM010195.2E-21129231IPR003340B3 DNA binding domain
PfamPF065073.9E-32255340IPR010525Auxin response factor
PfamPF023094.5E-11540639IPR033389AUX/IAA domain
PROSITE profilePS5174525.883550643IPR000270PB1 domain
SuperFamilySSF542774.84E-11552629No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAAAMDAPNP AAAAGSGGMP SDALYRELWH ACAGPLVTVP RQGERVYYFP QGHMEQLEAS  60
THQQLDQYLP MFNLPPKILC SVVNVELRAE ADSDEVYAQI MLQPEADQNE LTSLDPEPQE  120
PEKCTAHSFC KTLTASDTST HGGFSVLRRH AEECLPQLDM SLNPPCQELV AKDLHGTEWH  180
FRHIFRGQPK RHLLTTGWSV FVSSKRLVAG DAFIFMRGEN GELRVGVRRL MRQVNSMPSS  240
VISSHSMHLG VLATASHAIS TGTLFSVFYK PRTSRSDFIV SVNKYLEAKK QKISVGMRFK  300
MRFEGDEAPE RRFSGTIIGI GSLPAMSKSL WADSDWRSLK VQWDEPSSIL RPDRISPWEV  360
EPLDAANPQS PQPPPRPKRP RPPASPCMVS ELPSGFGLWK SPTESSRTLS FSEPQRAREL  420
FPSIPTSTFS SSSNVSFNSK NEPSMLTTQF YWSARDTRAD SCAASTNTVI VEKKQEPSSG  480
GCRLFGIDIC SAEEEVLPVV TAPGVGYEQT AASVELNSDK LSQGSDVNNS DAPAASSERS  540
PLESQSRQVR SCTKVIMQGM AVGRAVDLTK LSGYSDLCQK LEEMFDIHGE LGCTLKKWRV  600
IFTDDEDDMM LVGDDPWDEF CRMVKRIYIY TYEEAKKLTS KSKLPVSSDS SKLSAVNSLS  660
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01736512357Auxin response factor 1
4ldw_A0.01736512357Auxin response factor 1
4ldw_B0.01736512357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377381KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.65490.0root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G089500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446522.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLC5Y8U90.0C5Y8U9_SORBI; Auxin response factor
STRINGSb06g017490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]