PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G087100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 332aa    MW: 37479.5 Da    PI: 10.4288
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G087100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.3e-06275297327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            e Cr+f++   C++ ++C+FaH++
  Sobic.006G087100.1.p 275 VEVCRDFLK-NMCNR-ESCRFAHPE 297
                           699******.*****.*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.60193121IPR000571Zinc finger, CCCH-type
SMARTSM003560.0493120IPR000571Zinc finger, CCCH-type
PfamPF146080.01199119No hitNo description
SMARTSM003560.23128154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836128155IPR000571Zinc finger, CCCH-type
PfamPF146083.4140153No hitNo description
PROSITE profilePS5010312.756170198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4170196IPR000571Zinc finger, CCCH-type
SMARTSM003560.012171197IPR000571Zinc finger, CCCH-type
PfamPF146080.83175195No hitNo description
SMARTSM003560.73200225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.296205226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4271297IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-4272297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507272298IPR000571Zinc finger, CCCH-type
PfamPF146080.0051278296No hitNo description
SMARTSM003560.36304329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.535304330IPR000571Zinc finger, CCCH-type
PfamPF146080.087310328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MASAEIPNSS PDATNRAAAA AAGPDLSSSP PLPPRKRRLS PSPSPTRSAS RSRSPRSRSP  60
RGRRSRSRSR SRSRSRSRSP QYPPDGKRRR HNDLNVEACR DFLRDRCTRS DLECRYAHPH  120
NSVSVDRDNK VTACADSLRN NCFRGRTCRY YHPPPHIQEQ LLRSIGVEDP KVKTICRDFT  180
RGKCSRSANE CRFLHHSSVE DVAIVCQDFL RGQCNRIACR YSHVVAHPVP PMSHVPMPYP  240
EMLYMPPPPP PPLGVPMMGP LPSPPRPFAD NKNRVEVCRD FLKNMCNRES CRFAHPETHT  300
TAASANVEVC RDFKRGECTR PACRYFHPYT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u6h_A2e-14941611479Muscleblind-like protein 1
5u9b_A2e-14941611479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16777RSRSRSRSRSR
26977RSRSRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.85300.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G087100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389870.0BT038987.1 Zea mays full-length cDNA clone ZM_BFb0347N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318777.10.0zinc finger CCCH domain-containing protein 28-like isoform X2
SwissprotQ0JD071e-131C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A1Z5RD070.0A0A1Z5RD07_SORBI; Uncharacterized protein
STRINGSb06g017290.20.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Representative plantOGRP1013666
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]