PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G083201.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 359aa    MW: 38767.2 Da    PI: 6.5107
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G083201.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS200.51e-61234684374
                  GRAS  84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg......................pp.slRiTgv 147
                           f+++sPi++++h+taNqaI+ea+e+   +r+H++Dfd+s+G+QWp+L+q+++  +++                      pp slRiTg+
  Sobic.006G083201.1.p   2 FYQASPIYQLAHFTANQAIVEAFESGgrRRLHVVDFDVSYGFQWPSLIQSMSHAAAStststcttsssshdggdgdcaePPvSLRITGL 90 
                           9**********************9876699*********************988755567889999999999******9666******* PP

                  GRAS 148 gspesgskeeleetgerLakfAeel.gvpfefnvlvakrledl....eleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevL 228
                           g     + +el++t+ rLa+fA+ + +++fef+ +v+ + +      + e+++v+ + +++Vnlv+     +++s++++    + ++ L
  Sobic.006G083201.1.p  91 GT----NPDELRQTEARLARFASGCpNLRFEFEGIVVVDDDGPdsgrRHERIKVDDDATVVVNLVFPAAAAHQSSTTTSTrdeACSSAL 175
                           **....99**************98769******99554332222355899***************98877776655555433467899* PP

                  GRAS 229 klvkslsPkvvvvveqeadhnse.......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac.......... 300
                             ++sl+P +v +ve++   n++         l  f+ +l+y++a+fdsl++ lp++s er  +Er  lg ei+++ a           
  Sobic.006G083201.1.p 176 ARIRSLNPSLVFLVEKDGGGNATsrgrrssIVLPPFTASLRYFAAVFDSLHECLPADSAERLAIERNHLGAEISDAMASladynnnygg 264
                           *****************887766556666678999*****************************************9972222222221 PP

                  GRAS 301 egae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveee....sgslvlgWkdr.pLvsvSaWr 374
                            g++ +  +  t + Wr+++e+aGF+ v+ls+++++qaklll++ +  + g+rv  e    s ++ lgW+d  +L++++ Wr
  Sobic.006G083201.1.p 265 GGDDhHMVELPTTSCWRQMMERAGFERVELSSRTVSQAKLLLKMKSggGGGFRVMMEgeggSSAMSLGWRDSvQLITATGWR 346
                           122213445557889*****************************9965556999955555455666***997479****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.6321319IPR005202Transcription factor GRAS
PfamPF035143.5E-592346IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MFYQASPIYQ LAHFTANQAI VEAFESGGRR RLHVVDFDVS YGFQWPSLIQ SMSHAAASTS  60
TSTCTTSSSS HDGGDGDCAE PPVSLRITGL GTNPDELRQT EARLARFASG CPNLRFEFEG  120
IVVVDDDGPD SGRRHERIKV DDDATVVVNL VFPAAAAHQS STTTSTRDEA CSSALARIRS  180
LNPSLVFLVE KDGGGNATSR GRRSSIVLPP FTASLRYFAA VFDSLHECLP ADSAERLAIE  240
RNHLGAEISD AMASLADYNN NYGGGGDDHH MVELPTTSCW RQMMERAGFE RVELSSRTVS  300
QAKLLLKMKS GGGGGFRVMM EGEGGSSAMS LGWRDSVQLI TATGWRRRRR STNKPAFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-281348101381Protein SCARECROW
5b3h_A1e-281348100380Protein SCARECROW
5b3h_D1e-281348100380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G083201.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318456.10.0scarecrow-like protein 23
TrEMBLA0A1Z5RCW40.0A0A1Z5RCW4_SORBI; Uncharacterized protein
STRINGSb06g017210.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Representative plantOGRP81961117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-32GRAS family protein