PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G080200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 290aa    MW: 29659.8 Da    PI: 9.1056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G080200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20114163255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae+Aa+a++aa+++++g
  Sobic.006G080200.1.p 114 KYRGVRRRP-WGKWAAEIRDP-----HkaARVWLGTFATAEDAARAYDAAALRYRG 163
                           8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-32113172IPR001471AP2/ERF domain
PROSITE profilePS5103225.541114171IPR001471AP2/ERF domain
CDDcd000188.24E-19114172No hitNo description
PfamPF008471.1E-13114163IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22114172IPR016177DNA-binding domain
SMARTSM003808.5E-32114177IPR001471AP2/ERF domain
PRINTSPR003671.7E-11115126IPR001471AP2/ERF domain
PRINTSPR003671.7E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MPCGFMLGTR TMQQHTPTPT TMGCSEQSLA AETAAIVSAL THVVASGRGG PPRQAPPLVM  60
PIPWRRRADD DDGGGSAAAH HHHHGQQLVA VAGAAAAQAQ GTGTAAVAPA PARKYRGVRR  120
RPWGKWAAEI RDPHKAARVW LGTFATAEDA ARAYDAAALR YRGGRAKLNF PDAAAARRAR  180
DAEAASAAAR AGPPAALLES QSQQAAAGDD DMADYIDYSR ILEAAEPSGI MDGLFGGHGN  240
GRFLGSWSIG TSPPSSSGSG ASLAGAASSA SLFHQTDGGK QSSNNSGDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22110171163ATERF1
3gcc_A3e-22110171163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G080200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071252e-59AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
GenBankAL7139022e-59AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8448742e-59AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149682e-59AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126202e-59CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankCU4063552e-59CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319260.11e-174ethylene-responsive transcription factor ERF110
TrEMBLA0A1B6PKW50.0A0A1B6PKW5_SORBI; Uncharacterized protein
STRINGSb06g016710.11e-159(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.17e-17related to AP2 6