PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G074600.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 457aa    MW: 49890.4 Da    PI: 5.813
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G074600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.36.2e-24151216171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           r+++sL llt+kf++ll+++e+gi++ln+ ak+L    v  k+RRiYDi+NVLe+ +liekk kn+i wkg
  Sobic.006G074600.2.p 151 RYDSSLALLTKKFINLLKEAEDGILDLNSTAKTL---GV--KKRRIYDITNVLEGSGLIEKKLKNRICWKG 216
                           6899******************************...**..9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.1E-26148218IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-31151216IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-16151214IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.3E-22153216IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.02E-37226333No hitNo description
SuperFamilySSF1440741.31E-27227333No hitNo description
PfamPF164215.9E-28231331IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSEGARPAAA ARQIVKSLQR CGRLSLERPP FGAALGDYHQ FPRPSPSPAA AAAAAATPGG  60
REEFDEGIVI RTPIKRKAPY GECDTAESTG LSMASSGFIQ GVGSPRMTPI SGNTARKYKS  120
SKSEYTKAGP QTPTLNAGSP GNPPTPAGTC RYDSSLALLT KKFINLLKEA EDGILDLNST  180
AKTLGVKKRR IYDITNVLEG SGLIEKKLKN RICWKGLDKL GPNLDDDLSV LKTDFGNLNL  240
QEQALDEHIS KIQEKLKDLT EDESNKGWLF HTEDDIMGVR CFQNQTLIAI KAPQGSSLEV  300
PNPDVMIGDS LQRRYRLVIR STMGPIDLYL VSKTEEKMEG KLGDAAEPAG HTDVAKHGSI  360
ERPSAKRAWE RSRKEEVALK AQKTQKTPDL NPPCHSEGVL RRINPSDVDS GADYLLLTDY  420
DVSITDMWRT EEMQLDEIDP NDFLAEVVSS PETLEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-22146217174PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G074600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9490550.0EU949055.1 Zea mays clone 394824 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319035.10.0transcription factor E2FA isoform X2
TrEMBLA0A1Z5RCT00.0A0A1Z5RCT0_SORBI; Uncharacterized protein
STRINGSb06g016190.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-102E2F transcription factor 3