PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G065800.1.p
Common NameSb06g015280, SORBIDRAFT_06g015280
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 520aa    MW: 55263.2 Da    PI: 7.4818
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G065800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.19.9e-18131220186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +Wt+  +  L++a++++ e+l+rg l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++  +   +++s++p+f+++
  Sobic.006G065800.1.p 131 EWTDGAISSLLDAYTDRFEQLNRGHLRGRDWEDVASVVtdgkGKTTGGKSVEQCKNKIDNLKKRYKVECQRLTSSGGGAVSHWPWFKKM 219
                           5*************************************7765444446899***************99999999989999********* PP

              trihelix  86 e 86 
                           e
  Sobic.006G065800.1.p 220 E 220
                           8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.9E-20129222No hitNo description
Gene3DG3DSA:3.40.1160.106.6E-70275512IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.042277513IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.96E-50277512IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006963.3E-15280492IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.90E-114280513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHQPAT PPPAPPIAQQ PAPPPSQQAA HPFSFTVAPA GVAAGAGSFA  60
QVQEDSNHHA ESGKPAQHAK RGRERAEEFS SDGGEYCSYI NSSGSGGGGK KGCGGGGISS  120
VRDLYRKDRE EWTDGAISSL LDAYTDRFEQ LNRGHLRGRD WEDVASVVTD GKGKTTGGKS  180
VEQCKNKIDN LKKRYKVECQ RLTSSGGGAV SHWPWFKKME QIVGDSMSPA SSKPLAAAED  240
VKPRQQQQQH GSKRYPLSST GPPTGVGSSR TNPLSNPRWK RVLLKIGGTA LCGEAPQNVD  300
PKVIMLIARE VQVACHHGVE VAIVLGGRNI FCGDNWVAAT GTDRASTYPI GMMASVMNSV  360
LLQASLEKIG VETRVQTALM MQEVAEPYIR RRAIRHLEKG RVVIFGGIGA GTGNPLFTTD  420
TAAALRASEI NADVVLKGIV GDDESGCPPR SNSNASFEHI SFRELAARGI TKMDMTAVTC  480
CEENNIPVVI FNMLEPGNIS RAICGDQIGT LVDQSGRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-622715121239Uridylate kinase
3ek5_B2e-622715121239Uridylate kinase
3ek5_C2e-622715121239Uridylate kinase
3ek5_D2e-622715121239Uridylate kinase
3ek5_E2e-622715121239Uridylate kinase
3ek5_F2e-622715121239Uridylate kinase
3ek6_A2e-622715121239Uridylate kinase
3ek6_B2e-622715121239Uridylate kinase
3ek6_C2e-622715121239Uridylate kinase
3ek6_D2e-622715121239Uridylate kinase
3ek6_E2e-622715121239Uridylate kinase
3ek6_F2e-622715121239Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115GGKKGCGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G065800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0675670.0BT067567.1 Zea mays full-length cDNA clone ZM_BFc0089D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446396.10.0uncharacterized protein LOC8072072
TrEMBLC5YFR60.0C5YFR6_SORBI; Uncharacterized protein
STRINGSb06g015280.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-159Trihelix family protein