PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G059800.1.p | ||||||||
Common Name | Sb06g014800, SORBIDRAFT_06g014800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 29658.7 Da PI: 4.2561 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 41 | 92 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++l+g+ Sobic.006G059800.1.p 41 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 92 5799******.**********843...4*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.02E-28 | 41 | 100 | No hit | No description |
PROSITE profile | PS51032 | 21.562 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-32 | 42 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 42 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-10 | 42 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-21 | 42 | 99 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MNFSSYFFSS SSSSSEKKSS SSSSKQRRQQ QQQAQPDANT TRYLGVRRRP WGRYAAEIRD 60 PATKERHWLG TFDTAEEAAV AYDRAARSLR GARARTNFAY PDLPPGSSIT PYLSPDLTSG 120 DNATQLLQPF YAADPAAASS LQAAAAAPPA ANAGAGYGYG AGAGDDYYAS AYGYNDYSAE 180 DMSALMDDLA IPDDLTAEDA GGSVDMYSGG GGGGSGSANA SSGSGGGGWC DASEFSAYGG 240 ASSAASHGVY FEEGYVHSPL FSPMPAVDDA CADGFQLGGS SSSYYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-18 | 43 | 98 | 6 | 62 | ATERF1 |
3gcc_A | 4e-18 | 43 | 98 | 6 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G059800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728275 | 1e-164 | KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446365.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | C5YFB1 | 0.0 | C5YFB1_SORBI; Uncharacterized protein | ||||
STRING | Sb06g014800.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 8e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G059800.1.p |
Entrez Gene | 8072041 |