PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G058732.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 497aa    MW: 52458.1 Da    PI: 8.4931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G058732.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20260309255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Sobic.006G058732.1.p 260 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 309
                           7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-32259318IPR001471AP2/ERF domain
PfamPF008472.7E-13260309IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-22260318IPR016177DNA-binding domain
CDDcd000185.78E-30260318No hitNo description
SMARTSM003804.8E-38260323IPR001471AP2/ERF domain
PROSITE profilePS5103224.711260317IPR001471AP2/ERF domain
PRINTSPR003672.9E-11261272IPR001471AP2/ERF domain
PRINTSPR003672.9E-11283299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDIGDSPASP KCSECEGLEA RREGLTFAPC RDLRTSIGQW SGEKVDANLA EGSWHRKGGG  60
LCRPEHTTSP SRAAIGLRCW PKNFSTHRRR RRQIDRQLTK VDPRRRHGKR PLPADEEEEE  120
EELPPGPPPP PKHEQLDQEE PHHVDVSQLQ AGATFSGGGP SSSSVVVGAA AAGPSPEAYA  180
QYYYSARADH DASAVASALA HVIRASPDQH LPSQQAAAML YAAGAPGLRQ GDQPQAAAHH  240
HPGGHVAAAA EEEQAGRRRH YRGVRQRPWG KWAAEIRDPK KAARVWLGTF DTAEDAAIAY  300
DEAALRFKGT KAKLNFPERV QGRTDLGFLV TRGIPADHHP AAVTLAAMPP RHQHGHQTVV  360
PYPDLMQYAQ LLQGGARGGG SGGGDHAEAA AAVQQAQQQL MMMGAGGRGG VTLPFSFSPS  420
SSSSSATQIL DFSTQQLIRP GGLGPPSPAA AAMSSSSAAA AAPSTPSSTT TAASSSSPSG  480
SAWPYGGEHH RNRKDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-26259321467ATERF1
3gcc_A8e-26259321467ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G058732.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318101.10.0ethylene-responsive transcription factor ERF115 isoform X1
TrEMBLA0A1Z5RCF90.0A0A1Z5RCF9_SORBI; Uncharacterized protein
STRINGGRMZM2G425798_P021e-139(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.16e-22related to AP2 6l