PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G058400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Trihelix | ||||||||
Protein Properties | Length: 360aa MW: 38999 Da PI: 5.4532 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.3 | 1.3e-25 | 22 | 114 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlr.rgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rWt+qe+l+Lie++r +e++ r rg+ ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e++ +++++ Sobic.006G058400.2.p 22 RWTRQEILVLIEGKRVVERSGRgRGRgrvrgggggdggAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGYAARKE 110 8**************99999885333556777777887********************************************9754433 PP trihelix 77 stcpyfd 83 + f Sobic.006G058400.2.p 111 ---ASFW 114 ...3444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.0E-11 | 22 | 114 | No hit | No description |
PROSITE profile | PS50090 | 6.4 | 22 | 92 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 22 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MSNAGGEGSR GVGTGRGSRL PRWTRQEILV LIEGKRVVER SGRGRGRGRV RGGGGGDGGA 60 EPTKWAAVAE YCRRHGVDRG PVQCRKRWSN LAGDYKKIRE WERGYAARKE ASFWAMRNDA 120 RRERRLPGFF DREVYDILEG RGAAAGNAVA AALEDAEEGK EEEEEEEEVE AKAVLRTAGR 180 RGVQGSGLFS SSEDEDDQDD DAATPSPTPT PTPTPAPAAA VAVPIPGEQA VPFFLDEMAR 240 ASSISVHVTE KTTDVPRQAS SEQGTSKEKQ PEQITEDSPA QCGQKRQRSD DNASGRATTN 300 LQGQLVEILD RSSQMVAAQL EAQNINSRLD REQRKDQVSS LLGVLGKVAD ALYRIADKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G058400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949356 | 0.0 | EU949356.1 Zea mays clone 402974 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319044.1 | 0.0 | trihelix transcription factor ASR3 isoform X2 | ||||
TrEMBL | A0A1B6PKH4 | 0.0 | A0A1B6PKH4_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G149590_P01 | 1e-174 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 3e-41 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G058400.2.p |