PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G034900.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 770aa    MW: 84715.8 Da    PI: 5.1145
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G034900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-2075125656
                           S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +f  +q++eLe+ F+ +++p+ + r+eLA+k+gL+erqVk+WFqNrR ++k
  Sobic.006G034900.2.p  75 RFAMHQIQELEAQFRVCSHPNPDVRQELATKIGLEERQVKFWFQNRRSQMK 125
                           6999********************************************998 PP
2START121.21.4e-382474713205
                           HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                 START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                           a +a++e+v +a+ +ep+Wv+     + + +++ lq+f+          +  ea r++ +  +++++lv++l d++ qW+++++     
  Sobic.006G034900.2.p 247 AARAMKEFVMLATKGEPMWVLAKdgeKLNHQEYILQTFPG-LLglcpqgFVEEATRETDMIKGTAMDLVSILTDVN-QWSQMFPsmvaY 333
                           6789*******************99444556666788844.33699988899************************.*******77777 PP

                           EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE....-TTS--.-TTSEE-EESSEEEEEEE CS
                 START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd....seqkppesssvvRaellpSgiliep 156
                           ++  +vissg      g +qlm+ el + sp    R + f+R+++ +  g+w++vdvSvd    +eq+ +++s    ++llpSg+l+e+
  Sobic.006G034900.2.p 334 VSSSNVISSGsfslhdGLIQLMNVELWVQSPRLLnRSVKFLRFSKMMANGRWAVVDVSVDgiygVEQEGSSTSYTTGCRLLPSGCLLED 422
                           7888999999*********************6655*************************444456666657777889*********** PP

                           ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                 START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                           +s+g++kvtwv h+++++ +++ l+r+l++sg+a ga +w++ lq+qce
  Sobic.006G034900.2.p 423 MSGGYCKVTWVVHAEYDETTVPFLFRPLLQSGQALGACRWLRSLQKQCE 471
                           ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.38E-1757125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-1863125IPR009057Homeodomain-like
PROSITE profilePS5007116.45567127IPR001356Homeobox domain
SMARTSM003892.9E-1769131IPR001356Homeobox domain
PfamPF000461.1E-1775125IPR001356Homeobox domain
CDDcd000864.68E-1775125No hitNo description
PRINTSPR000319.8E-598107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000319.8E-5107123IPR000047Helix-turn-helix motif
PROSITE profilePS5084831.268236475IPR002913START domain
CDDcd088758.01E-73241471No hitNo description
SuperFamilySSF559614.32E-20244471No hitNo description
SMARTSM002342.9E-16245472IPR002913START domain
PfamPF018521.9E-31247471IPR002913START domain
SuperFamilySSF559616.6E-7499740No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MDIMDNGGQL NNNSNEQDND GFTMDEIPDL PWNSHMEYDV DAFLGAEDHV NTNQTTDDVD  60
HRSPVGETPS KGVKRFAMHQ IQELEAQFRV CSHPNPDVRQ ELATKIGLEE RQVKFWFQNR  120
RSQMKVKAYG DDNKGIRQEL AKLKAENEEL KQRRQNPICF MCTNPIAAIQ SENWRLLNDN  180
TRLKDEYVRS KAHMDRLIRE AAAEHPPSAM RSSDHHLASA HMNMDPVALT GNCRTTTNLE  240
ATLTSHAARA MKEFVMLATK GEPMWVLAKD GEKLNHQEYI LQTFPGLLGL CPQGFVEEAT  300
RETDMIKGTA MDLVSILTDV NQWSQMFPSM VAYVSSSNVI SSGSFSLHDG LIQLMNVELW  360
VQSPRLLNRS VKFLRFSKMM ANGRWAVVDV SVDGIYGVEQ EGSSTSYTTG CRLLPSGCLL  420
EDMSGGYCKV TWVVHAEYDE TTVPFLFRPL LQSGQALGAC RWLRSLQKQC EYITVLPSSH  480
VLPSSSSSSA ISTLGVGRRS VMELAGQMMV SFYAAVSGPV IVPATSSVNE WRLVSNGNGT  540
ERVEAFVRLV TWNCADIMPG EPSVTVLSAT TTVWLPGTPP LCVFEYLCDL QRRGEWDTHV  600
DAGEVKELSS VATSPQLPGN NVVSVLEPTT VVTDETESSK VLILQETSTD VSCFLVVYSL  660
IEESLMRGIM DGRERSNIFV LPSGFAILPD GHGKAHADHT AANSSNSAPI DSRNNNAGSI  720
VSVAFQTLLP GNLSSNLDNT GAFEDARLQV CHAITKIKAA VGASNIIPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G034900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684238.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A1Z5RD060.0A0A1Z5RD06_SORBI; Uncharacterized protein
STRINGSb06g004510.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Representative plantOGRP1982022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-115homeodomain GLABROUS 1