PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G022000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | B3 | ||||||||
Protein Properties | Length: 549aa MW: 61586 Da PI: 10.1729 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40 | 7.3e-13 | 48 | 112 | 31 | 99 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++t + ++ g++W+v++ + +++ +l++GW eF a+g+ g fvv++++g ++ l+vkvf++ Sobic.006G022000.2.p 48 AAERTALVVSPFGKVWRVEV--GRDGDGAFLGRGWAEFLAAHGVGLGWFVVLRHEG--GGALTVKVFDT 112 455689999***********..999999*************************765..7778*****97 PP | |||||||
2 | B3 | 47.6 | 3e-15 | 149 | 228 | 12 | 95 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ ++lp +f++++ ++ +skt ++ ++ g+ W ++l ++ ++++++t+GW++F + +g++ gD+++++++g++ f ++k Sobic.006G022000.2.p 149 SE-KMILPARFVKNYvTEECLNSKTAVILSPLGKFWHIEL--KNDKSGMFFTGGWSQFLEFHGICNGDVLLLRYEGNMVF--KFK 228 34.49*******999966667999****************..9999999**************************99999..554 PP | |||||||
3 | B3 | 55.6 | 9.9e-18 | 300 | 383 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 ++k+ ++ ++l++ +l+l+kkf++ +g +++tl+ e s rsW v+ ++g+ y+l++GWk+F+++n+Lk+gD ++F ++ Sobic.006G022000.2.p 300 WIKKKINTYALER-LLSLSKKFCNWIGFRFSCTITLKTEIDSTRSWLVRG--AAYKGScYILGEGWKSFCQDNRLKAGDLCTFNIIE 383 6789999999998.5********99988866766666666777*******..77777779***********************9775 PP | |||||||
4 | B3 | 58.2 | 1.5e-18 | 455 | 536 | 3 | 86 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +++++ ++ ++ rl+l f++++g+ +++++tl+ s++sW+v +++k+g y+++ GW++F+++n+Lk+gD+++F +++ Sobic.006G022000.2.p 455 QKEMNTNSIAR-RLSLAPAFCKKIGLRQRCTITLKTSINSSNSWRVGG-HWQKDGNYTIELGWQKFCRENELKVGDVCTFNVIE 536 45556666665.6**************99987777777999******9.7899999************************9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 7.6E-5 | 19 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-13 | 20 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-8 | 20 | 111 | No hit | No description |
SuperFamily | SSF101936 | 1.73E-13 | 25 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.1E-10 | 49 | 112 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.996 | 51 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 137 | 233 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-17 | 137 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-18 | 138 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.39E-13 | 138 | 230 | No hit | No description |
SMART | SM01019 | 1.3E-11 | 140 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-12 | 149 | 227 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-17 | 299 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.1E-8 | 301 | 395 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-13 | 302 | 383 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-18 | 303 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.33E-11 | 314 | 379 | No hit | No description |
PROSITE profile | PS50863 | 11.73 | 331 | 395 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.9E-16 | 448 | 546 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.616 | 452 | 548 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0016 | 454 | 548 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.05E-10 | 454 | 532 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-17 | 455 | 545 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-14 | 463 | 542 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MPLPSDPGPR PAAPAMAKQF KVLLPPFHKL RISDELAGCF DAGEGEGAAE RTALVVSPFG 60 KVWRVEVGRD GDGAFLGRGW AEFLAAHGVG LGWFVVLRHE GGGALTVKVF DTSLCIKEFG 120 APAAVMTSRT SKGVICKPQF IRIFHPYLSE KMILPARFVK NYVTEECLNS KTAVILSPLG 180 KFWHIELKND KSGMFFTGGW SQFLEFHGIC NGDVLLLRYE GNMVFKFKAF GLGGCQKDFR 240 HQNAGIQLNT EKRQETHSSI RKRKSNDNKS SSEENKRPKS SVTSPSLKLQ EPYQMGTTSW 300 IKKKINTYAL ERLLSLSKKF CNWIGFRFSC TITLKTEIDS TRSWLVRGAA YKGSCYILGE 360 GWKSFCQDNR LKAGDLCTFN IIETTLWHVT ITRSTLADTF KQKKSPCSSS RDHKTNKGSS 420 SSEEAKEPKI SMTSLSKVRS FTRCVYDIGP PSWIQKEMNT NSIARRLSLA PAFCKKIGLR 480 QRCTITLKTS INSSNSWRVG GHWQKDGNYT IELGWQKFCR ENELKVGDVC TFNVIETKLW 540 HVVITHRH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G022000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447504.2 | 0.0 | putative B3 domain-containing protein Os04g0346900 | ||||
TrEMBL | A0A1Z5RBP0 | 0.0 | A0A1Z5RBP0_SORBI; Uncharacterized protein | ||||
STRING | Sb06g002075.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 4e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G022000.2.p |