PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G020700.2.p
Common NameSb06g001940, SORBIDRAFT_06g001940
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 739aa    MW: 80749.6 Da    PI: 6.2332
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G020700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1960111556
                           SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +f+ eql++Le+ F+++ +p+ ++r+eLA+++g+++rqVk+WFqNrR++ k
  Sobic.006G020700.2.p  60 KRFNVEQLQQLESSFQECTHPDDAMRRELAARVGIETRQVKFWFQNRRTQTK 111
                           57**********************************************9987 PP
2START107.81.8e-342224443205
                           HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
                 START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                           ae+a +e+  +a  + p+W         +++++++ +f++ ++     + +ea r++++v +++ +l+ +l +++ +W et++    ++
  Sobic.006G020700.2.p 222 AECAIKEFDILARNGPPLWLPIIggnMLNIQEYTRLRFPRLHGicpqgFVVEATRDTALVRGTASDLLGILTNVP-RWFETFPgivaAV 309
                           5666677777777777778777777333455666668888777888889**************************.*******998888 PP

                           EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECT CS
                 START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksn 159
                             +  +ssg      g +q ++ +l + sp +p R   f+R++ q   gd+++vdvS++   +++   + +   ++llpSg+li+++++
  Sobic.006G020700.2.p 310 RDYHNVSSGifgsgnGLIQEINVDLSVESPCPPlRSMKFLRISMQTANGDFAVVDVSINGVHEQEAgsKNKHTSCRLLPSGCLIQDMGD 398
                           889999999**************************************************9988888878888999************** PP

                           CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                 START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                           gh++vtw+ h+++++ +++ ++r++ +sg+a+ga++w+a l+r+ce
  Sobic.006G020700.2.p 399 GHCQVTWIVHAEYNETIVPPIFRQFFGSGQAFGASRWLASLKRHCE 444
                           *********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-1945111IPR009057Homeodomain-like
SuperFamilySSF466894.28E-1748111IPR009057Homeodomain-like
PROSITE profilePS5007116.60153113IPR001356Homeobox domain
SMARTSM003894.1E-1756117IPR001356Homeobox domain
CDDcd000861.01E-1757111No hitNo description
PfamPF000468.5E-1760111IPR001356Homeobox domain
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PROSITE profilePS5084826.662211448IPR002913START domain
CDDcd088751.11E-91215444No hitNo description
SuperFamilySSF559611.45E-15219444No hitNo description
SMARTSM002346.6E-13220445IPR002913START domain
PfamPF018523.3E-28251444IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MENERQQNNK GDDELIYLPL DVEEYDMDAL MGEEDHLNND KATGGEEHNI NNGSSSKRSK  60
RFNVEQLQQL ESSFQECTHP DDAMRRELAA RVGIETRQVK FWFQNRRTQT KVKSYATENN  120
KFRQQNADLL AENMELHKEL TCSRCRDPTA EKWQLLDENA KLKEMCQRAN ADLTKLIQAA  180
DRPPSVTPED LALVTSMNPL SSNVGNSSSS TNNLQVTLLS YAECAIKEFD ILARNGPPLW  240
LPIIGGNMLN IQEYTRLRFP RLHGICPQGF VVEATRDTAL VRGTASDLLG ILTNVPRWFE  300
TFPGIVAAVR DYHNVSSGIF GSGNGLIQEI NVDLSVESPC PPLRSMKFLR ISMQTANGDF  360
AVVDVSINGV HEQEAGSKNK HTSCRLLPSG CLIQDMGDGH CQVTWIVHAE YNETIVPPIF  420
RQFFGSGQAF GASRWLASLK RHCEYKAVMH SSQVPTGGGL GVVTISALGR WNLLDLAQRM  480
MAIFYKTTSA MATVEPGTIV TMFGGRRGSA GEMVEPAVRM VLGNYYLGAM NGEPTFIKVL  540
SATTTVWLPG TPPEHVFNYL CNGQRRGEWD TFVCAGAVQE LSSIATCPDL HGNVVSILHP  600
NVTNAANNTA LLLQQESIDV SCALVVFSLV EKTMIHSIMG GGHSTSSFVL LPSGFAILPD  660
GHGRPHHAAA NSSSSALAGP NNRTPPGCLL TAAYQVQVSF NNLGHPDVQG TFEDAGMRIC  720
QAIKKIMAAV GTDLVVPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G020700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318696.10.0homeobox-leucine zipper protein ROC6
TrEMBLA0A1B6PJJ00.0A0A1B6PJJ0_SORBI; Uncharacterized protein
STRINGSb06g001940.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-92HD-ZIP family protein