PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.006G018600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 23886.2 Da PI: 8.8921 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.6e-05 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F++ L H+++H Sobic.006G018600.1.p 93 YTCGYCRREFRSAQALGGHMNVH 115 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.18E-6 | 91 | 120 | No hit | No description |
PROSITE profile | PS50157 | 11.074 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSPLTPTILR FTVITCISLG FIQVSCRGES LAAYTTRPHR RPPTMESSGD HGRRRLKPLQ 60 PWMTTTTTPA GHNNFSLAAG CFPWPPPLPS SCYTCGYCRR EFRSAQALGG HMNVHRRDRA 120 RLRQCCSASA AHHHHSRAPL PNLNFSPPHR AAAADPVIYS FFSTTTSTTT SAAAVATNKV 180 AALEVSLELG IGVCAGGGSG RGGVVVEEDG VDLELRLGCT WE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.006G018600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU959193 | 3e-51 | EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318484.1 | 3e-74 | zinc finger protein 11 | ||||
TrEMBL | A0A1B6PJH8 | 1e-161 | A0A1B6PJH8_SORBI; Uncharacterized protein | ||||
STRING | Sb06g001730.1 | 1e-140 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 7e-19 | zinc finger protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.006G018600.1.p |