PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G009500.1.p
Common NameSb06g000970, SORBIDRAFT_06g000970
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 543aa    MW: 55919.1 Da    PI: 9.9419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G009500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89e-06265287223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            Cp Cg++F+  ++L++H+   H
  Sobic.006G009500.1.p 265 ACPQCGEVFTKADTLEHHQAIrH 287
                           6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280264287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39264292IPR007087Zinc finger, C2H2
SuperFamilySSF563993.45E-14289374No hitNo description
Gene3DG3DSA:3.90.228.101.0E-7291373IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.101.0E-7411538IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563993.45E-14411538No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MALATLLLPS SGGSTATKAG TGDHRTDSRR QHDHHHHHHG SKRKKKAPPS PQPSLPSSSA  60
PRTPPAGARS HRVVMAASSS SSSSRKSPAM SMVPAAAGKN NNHAQYQYQQ RRGHQATTKK  120
ASTAASSSSS SWEQVKSLLS CRSATAAARV HDPSAPSALA RLRGAGGAGT CGASLCAMRD  180
VVVDAASSAA SSSAAASASD TAPLNRRRAH RGGASSSSTA GNSGTSSSHH SSSLRPRGLS  240
GCYECRAINV EPMSRRYPRP REVCACPQCG EVFTKADTLE HHQAIRHAVS ELGPEDSGRN  300
IVEIIFKSSW QKRDRRRSIC HIDRILKVHN APRTVARFEA YRDAVRSRCR AVVAARAAAD  360
GNELLRFHSA PLACSLGLSG ATALCCSSGA AAAGAAADDD ADAAASSPCG VCTAIRHGFA  420
PWVGAHPLGV RTTASSGRAH DCGSSSASPS SSSSVPAASD VNGPAAAGCR AMLVCRVIAG  480
RVRRDGGDTS SSAAAEEDGP FDSVAGEDAA SSSVYGNLEE LFVANPRAIL PCFVVIYRVL  540
DS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G009500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856070.0BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319717.10.0uncharacterized protein LOC8065969
TrEMBLC5YBQ30.0C5YBQ3_SORBI; Uncharacterized protein
STRINGSb06g000970.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-71C2H2-like zinc finger protein