PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G003800.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 359aa    MW: 38903.3 Da    PI: 6.7939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G003800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.72e-31321782128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..........leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                           p+G++F P+d+el+ e+L+  v  k+           ++ ++i+   di++++P++Lp  v+++  + +fF+k++k+y+tg+rk+r+  
  Sobic.006G003800.2.p  32 PAGVKFAPSDQELI-EHLESMVLVKEgggsrahpllSHFISTIEGGnDICYTHPENLP-GVAKDGLSKHFFHKTSKAYPTGTRKRRKiq 118
                           89************.99****999988888886664333234666669**********.555666799******************879 PP

                   NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     + ++ W++tg++++v++ +g+++g+kk+Lv+++ ++   ekt+W+mh+y+l
  Sobic.006G003800.2.p 119 sergqrssedAGEAHWHKTGRTHAVIV-GGRQKGCKKILVLHNIKQGMREKTNWIMHQYHL 178
                           999999888777999************.99************9999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3325199IPR003441NAC domain
PROSITE profilePS5100530.20131199IPR003441NAC domain
PfamPF023651.5E-1332178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGDSSATNGS NDTEATASLA CPNCNLNLAG FPAGVKFAPS DQELIEHLES MVLVKEGGGS  60
RAHPLLSHFI STIEGGNDIC YTHPENLPGV AKDGLSKHFF HKTSKAYPTG TRKRRKIQSE  120
RGQRSSEDAG EAHWHKTGRT HAVIVGGRQK GCKKILVLHN IKQGMREKTN WIMHQYHLGM  180
SDADDEKDGE LVLSKVFYRC PDATMVEVEH NNEKVEVTSE ATSNILRVSG AAAVTAATVN  240
MVQQQQHRPQ RQAHGQDQCK FAPPNMFQEA GVGELVSGDQ GQVHDNNHHI PSQHLVQSVH  300
MEPDTTLSLQ VGVGDPVSGD QGQVHGNNHH IPSQNHVQSV DTEPVTTLSL ALSAGWCK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.006G003800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318611.10.0NAC domain-containing protein 10-like
SwissprotQ9M0F81e-67NAC75_ARATH; NAC domain-containing protein 75
TrEMBLC5YBA70.0C5YBA7_SORBI; Uncharacterized protein
STRINGPavir.J36494.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3774923
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-69NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]