PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G230700.2.p
Common NameSb05g027800, SORBIDRAFT_05g027800
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 620aa    MW: 68554.7 Da    PI: 5.6971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G230700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.32.3e-922306062373
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevs 88 
                           ++lLl+cA+av++   + a++lL++ +++asp+gd++qRla++f+eAL+arla+++s l ++l++ +t++    s e l+a++lf  ++
  Sobic.005G230700.2.p 230 RTLLLSCAQAVDE--RHGARELLEQAKQHASPTGDATQRLAHCFVEALEARLAGTGSVLHRSLAALDTTTLLqqSPEFLQAYRLFAATC 316
                           789********98..679***************************************9999998887776434599************* PP

                  GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            + ++++  aN +I +a++g++r+H++D+++  GlQWp Ll+ La+R+ ++pp++ iT v+ p +g   ++ +eetg+rL+++A+elgv
  Sobic.005G230700.2.p 317 CFQRVGFAFANMTICRAAAGSSRLHVVDYGLHLGLQWPDLLRRLAARDgGPPPEVTITCVDLPLPGfrPARHMEETGHRLSDYARELGV 405
                           ************************************************55667**********99999********************* PP

                  GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                           pf+f++++a r+e+++++  + +pg +l+Vn+ ++l++l d+s+ ++   +rd vL  + +++P v+++   +  + ++sFl+rf eal
  Sobic.005G230700.2.p 406 PFKFHAVAAARWEAVRIDP-DPDPGVVLVVNSLFKLETLADDSLVVDRssPRDMVLGGIARMRPAVFTHGVVNGLC-GNSFLTRFREAL 492
                           ******9999*****7766.6788******************98766555********************999988.679********* PP

                  GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr.kvksdgy 349
                            y+sa fd+l+a+lpr se+r+++Er +l+  +vnvvaceg +r+ r  t+++W++r ++aG++++pl+  ++  +  +++ +++ +++
  Sobic.005G230700.2.p 493 FYFSAAFDMLDATLPRSSEQRMVLERDFLRACVVNVVACEGHDRTDRFDTYKQWQQRSRRAGLRQLPLDPAVVGAVTEMVKqQCYHREF 581
                           *************************************************************************998877761566999* PP

                  GRAS 350 rveee.sgslvlgWkdrpLvsvSaW 373
                            ++e+ +g+l++gWk+r L++ S W
  Sobic.005G230700.2.p 582 VIDENdDGWLLQGWKGRILYAHSTW 606
                           **965389999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.863203585IPR005202Transcription factor GRAS
PfamPF035148.0E-90230606IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MAATLEELSP SVFLHLPPTP HHDNGVPSSE QQQEDVALEH ISRLLMEEEE EDMHGMFLIN  60
DNDPALVHAQ QSLAQIIASS SSSSSSTRNG NGASHLYKDG NSATVSDMCA TATGAEACSV  120
MDLLNMAFVK GREEGCKFLP KDNKKLVMKD TTSRNYGPEA EAGRACKVMA TVARPEEEAQ  180
VQELIGRMML DDCEVPTEEM ERLRAAMADE AAMSNSREAR RRRQQQVDMR TLLLSCAQAV  240
DERHGARELL EQAKQHASPT GDATQRLAHC FVEALEARLA GTGSVLHRSL AALDTTTLLQ  300
QSPEFLQAYR LFAATCCFQR VGFAFANMTI CRAAAGSSRL HVVDYGLHLG LQWPDLLRRL  360
AARDGGPPPE VTITCVDLPL PGFRPARHME ETGHRLSDYA RELGVPFKFH AVAAARWEAV  420
RIDPDPDPGV VLVVNSLFKL ETLADDSLVV DRSSPRDMVL GGIARMRPAV FTHGVVNGLC  480
GNSFLTRFRE ALFYFSAAFD MLDATLPRSS EQRMVLERDF LRACVVNVVA CEGHDRTDRF  540
DTYKQWQQRS RRAGLRQLPL DPAVVGAVTE MVKQQCYHRE FVIDENDDGW LLQGWKGRIL  600
YAHSTWVALA DESAPPPRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3923155589421Protein SHORT-ROOT
5b3h_B6e-4023157435386Protein SHORT-ROOT
5b3h_E6e-4023157435386Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G230700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450074.10.0scarecrow-like protein 34
TrEMBLA0A1Z5RL820.0A0A1Z5RL82_SORBI; Uncharacterized protein
STRINGSb05g027800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.11e-108GRAS family protein