PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G230600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRAS | ||||||||
Protein Properties | Length: 585aa MW: 66680.4 Da PI: 6.698 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 299 | 1.2e-91 | 207 | 576 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL++cA+avs+++++ a++lL++++++as +gd++qRla++f+++L+arl++++ +l + l+ ++ +e l+a++l+ ++ + Sobic.005G230600.2.p 207 TLLINCAQAVSASNFRTAHELLKQIKQHASATGDATQRLAQCFAKGLEARLMGTGRQLWQLLTLEQPL---AIEYLKAYNLYMATCSFN 292 79*********************************************************999888887...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +++ + +I a+ g++++Hi+D++ +G+QW+ Ll+ +a+R++gpp++RiT++++ ++ +e + tg+rL k A+e+gvpf+f Sobic.005G230600.2.p 293 RVALFFNVMTIEHAMVGKSKLHIVDYGPHHGFQWAGLLRWMANREGGPPEVRITAISRLQPRscPSEGTDDTGRRLDKCAREFGVPFKF 381 **********************************************************9999999************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 ++ ++ ++e++++++L+++ +E+l+V ++ l +e+ + rd+vL+ +++++P+v++ +++h s+sFl+rf eal ys Sobic.005G230600.2.p 382 HA-ITAKWETISIDDLKTEADEVLVVVDLFSFSILREENIYFDGlsSRDTVLNNIRKMRPDVFIQGIMNCSH-STSFLTRFREALFSYS 468 **.6999*******************999988888777776665668*************************.899************* PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 alfd+l+a++pr+s+ r ++E+ +lg ++ n+vacega+ ++r e++++W+ r ++aG++++pl+ +++k k + k + + + + e+ Sobic.005G230600.2.p 469 ALFDMLDATIPRDSKLRPVLEQNMLGHSVLNLVACEGADVVNRPEKYRRWQVRNQRAGLRQLPLKPNIVKVLKDKVMKDHHKDFFISED 557 *************************************************************************9999998788****** PP GRAS 355 sgslvlgWkdrpLvsvSaW 373 ++l++gW++r ++ S W Sobic.005G230600.2.p 558 GQWLLQGWMGRIFYAHSTW 576 ******************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 52.199 | 179 | 557 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-89 | 207 | 576 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MATTPEEFFM EGLMNLSPPS PSVLLDLPQM TNDVGQDSLC PDEIVLSYVS SVLMEDQSED 60 KLLCQDTDHP SLLQDCSGDQ CTLRSSLSIG ALAAGSVLKG MEEASRFLSE DNVFRKDQQL 120 NQMTRESGNS RVFKKRYNRD EDGEVGRAYK VFMMMEELEE MFDKMMLRGY ETCIEEMKKL 180 RITKADEAKN KKKGYNKRRS NVVDLYTLLI NCAQAVSASN FRTAHELLKQ IKQHASATGD 240 ATQRLAQCFA KGLEARLMGT GRQLWQLLTL EQPLAIEYLK AYNLYMATCS FNRVALFFNV 300 MTIEHAMVGK SKLHIVDYGP HHGFQWAGLL RWMANREGGP PEVRITAISR LQPRSCPSEG 360 TDDTGRRLDK CAREFGVPFK FHAITAKWET ISIDDLKTEA DEVLVVVDLF SFSILREENI 420 YFDGLSSRDT VLNNIRKMRP DVFIQGIMNC SHSTSFLTRF REALFSYSAL FDMLDATIPR 480 DSKLRPVLEQ NMLGHSVLNL VACEGADVVN RPEKYRRWQV RNQRAGLRQL PLKPNIVKVL 540 KDKVMKDHHK DFFISEDGQW LLQGWMGRIF YAHSTWVAED TISE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-38 | 211 | 535 | 25 | 337 | Protein SCARECROW |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G230600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317864.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A1Z5RKD1 | 0.0 | A0A1Z5RKD1_SORBI; Uncharacterized protein | ||||
STRING | Sb05g027795.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-110 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G230600.2.p |