PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G230400.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 480aa    MW: 53886.2 Da    PI: 5.9121
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G230400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS164.11.1e-502024312240
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                            +lL++ A+av + d + +++lL++++e+asp+gd++qRl+  f+++L+arla++ s++y++l++++ts    +e l+a+++f      
  Sobic.005G230400.2.p 202 HTLLIHRAKAVID-DRQSVDELLSQMKEHASPTGDATQRLVYWFVQGLEARLAGTESQVYRSLTANRTS---LVEFLKAYQFFM----- 281
                           5789999**9987.8999*******************************************99999998...9*******9985..... PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                            k +++ aN++Il+a+ g +++Hi+D+++  G+QW  Ll+ L +R++gpp++RiT ++ p++g   ++ + e+g+rL++ A+el ++f 
  Sobic.005G230400.2.p 282 -KAAFMFANKTILDAAIGRSKLHIVDYGLRSGFQWTELLRLLGTRDGGPPQVRITSIDLPQPGfhPANHMAEMGHRLTSCAHELPLSFC 369
                           .6799*********************************************************9999****************9987777 PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvv 240
                           + v     ++++ +++L+v+p+E+l+Vn  ++  +l+desv +++  +rd vL+ +++++P+v++
  Sobic.005G230400.2.p 370 YVV---APWHTVCIDDLNVEPDEVLVVNDLFNFRTLMDESVISDNpsPRDVVLSNIRKMEPDVFI 431
                           765...79********************************98887779***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.497175479IPR005202Transcription factor GRAS
PfamPF035144.0E-48202431IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAAPRVVRGF TPAPRVDVDA ASSSYLSRIS LLMEEEDEED DLADHPAFLH PFTQILSGAP  60
LPDQAPVFPG GTPPEDKEYR TDMFTAAFFK AVEEATATLL ARDTSSGGGK DRRDRHTVGG  120
DDELEADAGR TSKMAMSESE EAGAREVFDE MMLRGFDVCS KEMEGLAISV ENVPAKDDDK  180
KKARKRSRAW GKRRPAKVIE LHTLLIHRAK AVIDDRQSVD ELLSQMKEHA SPTGDATQRL  240
VYWFVQGLEA RLAGTESQVY RSLTANRTSL VEFLKAYQFF MKAAFMFANK TILDAAIGRS  300
KLHIVDYGLR SGFQWTELLR LLGTRDGGPP QVRITSIDLP QPGFHPANHM AEMGHRLTSC  360
AHELPLSFCY VVAPWHTVCI DDLNVEPDEV LVVNDLFNFR TLMDESVISD NPSPRDVVLS  420
NIRKMEPDVF IQAVHVREWT VWNVVRHKLW QVRNQRADLR QLPLNGETVK MVRDMVKNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-2020342935275Protein SHORT-ROOT
5b3h_E1e-2020342935275Protein SHORT-ROOT
5hyz_A8e-212014065218GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179193KKKARKRSRAWGKRR
2182188ARKRSRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G230400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317863.10.0scarecrow-like protein 14
TrEMBLA0A1Z5RK640.0A0A1Z5RK64_SORBI; Uncharacterized protein
STRINGSb05g027786.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-55SCARECROW-like 14