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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.005G230300.2.p |
Common Name | Sb05g027785, SORBIDRAFT_05g027785 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
GRAS |
Protein Properties |
Length: 640aa MW: 71133.5 Da PI: 6.8194 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G230300.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 302.1 | 1.3e-92 | 244 | 636 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
lLl+cA+av+++d ++aq lLa+++ ++s +gd+ qR+a++f+e+L+arla+++s+ly++l ++ts +++ l a++l+ ++ +
Sobic.005G230300.2.p 244 HALLLRCAQAVATDDRAAAQDLLAHIRRHSSATGDAAQRMAHCFAEGLEARLAGTGSRLYRSLMLRRTS---VADFLRAYRLYMAACCC 329
579***************************************************************999...***************** PP
GRAS 91 lkfshltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakf 168
k+++ N++I +av+ + +r+Hi+D+++++G+QWp Ll++La ++gpp +RiTg++ p++g ++++e tg+rL++
Sobic.005G230300.2.p 330 KKVAFTFSNKTIHDAVAVAggassrrrRRLHIVDYGLGYGFQWPGLLRSLAVMEGGPPeLVRITGIDLPQPGfrPARQIEDTGRRLSDC 418
***************987666778888999*********************9998888689**********9*9*************** PP
GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvv 242
A++lgvpf f+ +a + ed+++e+L+++p E+l+V + + ll + +s+rdevL +++++P+v+++
Sobic.005G230300.2.p 419 ARQLGVPFAFRG-IAAKREDVSPEDLHIDPaAEVLVVISLCHFR-LLadeidiisgaavagPGRRRRPSPRDEVLGNIRRMRPDVFIHG 505
************.69999************88888887777555.44599999999999764455556689****************** PP
GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
++++ F +rf ea+ yysa fd l+a++pr+s er +Er ++gr+++nvvaceg++r+er et+++W+ r ++aG++++pl+
Sobic.005G230300.2.p 506 VVSGGYGTTYFPTRFREAMFYYSAQFDLLDATVPRDSPERLLLERDIFGRAAMNVVACEGTDRVERPETYRQWQVRNQRAGLRQLPLEP 594
***************************************************************************************** PP
GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+++k + ++ + + + v+e++ +l+ Wk+r L+ +S W
Sobic.005G230300.2.p 595 HVVKVVMDKVKDNYHRDFVVDEDQRWLLHRWKGRVLYGLSTW 636
**************999************************* PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 640 aa
Download sequence Send
to blast |
MAAAPLPPDD LFLVHPDPPS PSVFLDLPPA PPNDDDDMVL PYISHLLMEE EDAHAESFFY 60 QYPDHPALLH AQQPFADILA DVSSASASAT TSPSDDSDHS PTGNGRDANA ADMATSAFLK 120 GMQEATNLLP SVLSTNNSTL LLNHACKNSH AAARDDDGDP DPESRRAAKL MLPAEPADEA 180 DARRMFDQLM IHERDDICIK MKGVPQHQQQ GQGVDDDNPT QRRRRLRRRR STSTTSTDTV 240 VDLHALLLRC AQAVATDDRA AAQDLLAHIR RHSSATGDAA QRMAHCFAEG LEARLAGTGS 300 RLYRSLMLRR TSVADFLRAY RLYMAACCCK KVAFTFSNKT IHDAVAVAGG ASSRRRRRLH 360 IVDYGLGYGF QWPGLLRSLA VMEGGPPELV RITGIDLPQP GFRPARQIED TGRRLSDCAR 420 QLGVPFAFRG IAAKREDVSP EDLHIDPAAE VLVVISLCHF RLLADEIDII SGAAVAGPGR 480 RRRPSPRDEV LGNIRRMRPD VFIHGVVSGG YGTTYFPTRF REAMFYYSAQ FDLLDATVPR 540 DSPERLLLER DIFGRAAMNV VACEGTDRVE RPETYRQWQV RNQRAGLRQL PLEPHVVKVV 600 MDKVKDNYHR DFVVDEDQRW LLHRWKGRVL YGLSTWVAC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727020 | 0.0 | KJ727020.1 Zea mays clone pUT4001 GRAS transcription factor (GRAS68) gene, partial cds. |