PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G229900.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GRAS

Protein Properties

Length: 675aa MW: 74963.6 Da PI: 5.7875

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G229900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	323.7	3.7e-99	281	662	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 +lL++cAeavs +d++ a +lLa++++l+sp+gd++qRla++f+e+L+arla+++s+ly++l +++++ +++e l+a++l+ vs + Sobic.005G229900.1.p 281 STLLIHCAEAVSMDDHATAAQLLAQIKKLSSPRGDANQRLASCFAEGLEARLAGTGSTLYSSLVAKRST--SVTEFLKAYQLYLAVSCF 367 579**********************************************************999887..5************* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177 ++ N +I +a++g++++Hi+D+++ +G QWp+Ll+ La+R++gpp++R+T ++ pe+g + ++ etg+rL+kfA+++g+pf+ Sobic.005G229900.1.p 368 KMTAYRFSNMTISKAIAGKKKLHIVDYGVLYGCQWPNLLHYLANRRGGPPEVRMTCIDLPEPGfrPTARVDETGRRLSKFARQCGLPFK 456 **********************************************************999******************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.....desvsleserdevLklvksl......sPkvvvvveqeadhnsesFle 255 f+ +a ++e+++ ++L+++ +E+l+Vn++ + ++l+ d++ + +s+rd vL+ ++++ ++v++++ ++++ ++ F++ Sobic.005G229900.1.p 457 FHG-IAAKWETVRADDLDIDADEVLVVNSINKFENLMdeagiDDDIHRPSPRDVVLRNIRKMmrppaaAADVFIHSVVNCSYATPFFVA 544 .799**************************94444455566666*****9974333334699************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 rf eal +ysa+fd+l+a+++r+s+ r+ vEr l+g+ + nvvacega+r+er et+++W++r ++aG++++p+ +a+k + +r+ Sobic.005G229900.1.p 545 RFREALFHYSAMFDMLDATVSRDSDLRVAVERDLVGWCALNVVACEGADRVERPETYRQWQARNRKAGLRQLPFFPNAEKILREKMRNE 633 ***********************************************************************************99 PP GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaW 373 + + + ++ e+++l++gWk+r L+++S W Sobic.005G229900.1.p 634 YHKDFVIDVENNWLLQGWKGRILYAMSTW 662 9888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.558	254	643	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-96	281	662	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MAAAPEDGEP EPFSPSVFLD LPPTPRVEGD DDDPPLLTDD LVLPYISRML MEEDMDDDRF 60 FYHYPDHPAL LQAQQPFADI LSGSGSGSAN GSGTTFTPSS PSSSSSYVNV VVPAFATATW 120 PYDPLELTQR LTAGAAQEAG SQFFQSTDKG SQSRHVQNRV SMEDMINQAF LKGMEEANKL 180 LPGTSSSSSN KDGALLFGET NHGHGNSRGR RKNRRHDDFL EEGGETGRKS KLMAPEPEET 240 GEMVDKMVID GYNLCVNKMK TLSITTPTTK EVNNKNSSNL STLLIHCAEA VSMDDHATAA 300 QLLAQIKKLS SPRGDANQRL ASCFAEGLEA RLAGTGSTLY SSLVAKRSTS VTEFLKAYQL 360 YLAVSCFKMT AYRFSNMTIS KAIAGKKKLH IVDYGVLYGC QWPNLLHYLA NRRGGPPEVR 420 MTCIDLPEPG FRPTARVDET GRRLSKFARQ CGLPFKFHGI AAKWETVRAD DLDIDADEVL 480 VVNSINKFEN LMDEAGIDDD IHRPSPRDVV LRNIRKMMRP PAAAADVFIH SVVNCSYATP 540 FFVARFREAL FHYSAMFDML DATVSRDSDL RVAVERDLVG WCALNVVACE GADRVERPET 600 YRQWQARNRK AGLRQLPFFP NAEKILREKM RNEYHKDFVI DVENNWLLQG WKGRILYAMS 660 TWAAADDNTI SSEL*

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MAAAPEDGEP EPFSPSVFLD LPPTPRVEGD DDDPPLLTDD LVLPYISRML MEEDMDDDRF  60
FYHYPDHPAL LQAQQPFADI LSGSGSGSAN GSGTTFTPSS PSSSSSYVNV VVPAFATATW  120
PYDPLELTQR LTAGAAQEAG SQFFQSTDKG SQSRHVQNRV SMEDMINQAF LKGMEEANKL  180
LPGTSSSSSN KDGALLFGET NHGHGNSRGR RKNRRHDDFL EEGGETGRKS KLMAPEPEET  240
GEMVDKMVID GYNLCVNKMK TLSITTPTTK EVNNKNSSNL STLLIHCAEA VSMDDHATAA  300
QLLAQIKKLS SPRGDANQRL ASCFAEGLEA RLAGTGSTLY SSLVAKRSTS VTEFLKAYQL  360
YLAVSCFKMT AYRFSNMTIS KAIAGKKKLH IVDYGVLYGC QWPNLLHYLA NRRGGPPEVR  420
MTCIDLPEPG FRPTARVDET GRRLSKFARQ CGLPFKFHGI AAKWETVRAD DLDIDADEVL  480
VVNSINKFEN LMDEAGIDDD IHRPSPRDVV LRNIRKMMRP PAAAADVFIH SVVNCSYATP  540
FFVARFREAL FHYSAMFDML DATVSRDSDL RVAVERDLVG WCALNVVACE GADRVERPET  600
YRQWQARNRK AGLRQLPFFP NAEKILREKM RNEYHKDFVI DVENNWLLQG WKGRILYAMS  660
TWAAADDNTI SSEL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-41	286	662	25	378	Protein SCARECROW
5b3h_A	2e-41	286	662	24	377	Protein SCARECROW
5b3h_D	2e-41	286	662	24	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G229900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317230.1	0.0	scarecrow-like protein 14
TrEMBL	A0A1Z5RKL0	0.0	A0A1Z5RKL0_SORBI; Uncharacterized protein
STRING	Pavir.Hb00042.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297
Representative plant	OGRP266	15	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-128	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Sobic.005G229900.1.p