PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G229700.1.p
Common NameSb05g027770, SORBIDRAFT_05g027770
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 641aa    MW: 70537.6 Da    PI: 4.7452
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G229700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS71.41.7e-223044083110
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                            lL++cA+av+ +d   a +lL ++++++sp+gd+ qRla yf+e+L+arla+s+s +y++l +++ts   +++ l+a++l+  ++ + 
  Sobic.005G229700.1.p 304 ALLMHCAQAVAMDDRCSAAELLRKIKKHSSPRGDAAQRLARYFAEGLEARLAGSGSPVYNSLMAKRTS---VVDFLKAYRLYAAACCFR 389
                           69************************************************************999999...****************** PP

                  GRAS  92 kfshltaNqaIleavegee 110
                            +++  aN +I +a++g +
  Sobic.005G229700.1.p 390 MMAFKFANLTISKAIAGRK 408
                           **************99876 PP
2GRAS174.39e-54415634155373
                  GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvv 241
                           + +++etg+rL+++A+++gvpf+++  +a ++e++ +++L+++p+E+l+Vn++l+  +l+de v+++s  +rd vL+ +++++P+v+++
  Sobic.005G229700.1.p 415 AARVKETGRRLSSYASQFGVPFKYRG-IAAKWETVGVDDLDIDPDEVLIVNSILHFGNLMDEGVDMSSpsPRDVVLSNIRKMRPDVFIL 502
                           6789**********************.799********************************999998889****************** PP

                  GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                              +  ++s+ F+ rf eal +ysa+fd+++a+ pr+s+ r+ vEr l+g+ ++nv+aceg +r+er et++kW+ r ++aG+++++l+
  Sobic.005G229700.1.p 503 FIMNGTYSSPYFVPRFREALFHYSAMFDMMDATTPRDSDLRVLVERDLFGQCAQNVIACEGLDRVERPETYKKWQLRNHRAGLRQLSLD 591
                           ***************************************************************************************** PP

                  GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            +++k ++  +r    + +  + + ++l+ gWk+r L+++S W
  Sobic.005G229700.1.p 592 PDIVKAVQESVRDKFHEDFVTDVDLQWLLGGWKGRILYAMSTW 634
                           ********9999877788************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.333276615IPR005202Transcription factor GRAS
PfamPF035146.0E-20304408IPR005202Transcription factor GRAS
PfamPF035143.1E-51415634IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MAASPEDFVA EPAEPPFSPS IFLDLPPTPC PDGNGEGKDP ASDDLGLPFI ERMLMEEGIH  60
EEFFYQYPDH PALLQAQESY ARVLSDATAD STSYGSPTVS VSSSGSDDLT TDASTGSEQS  120
PAQAQLRDGG ARSDAAAAEE EMEEKANSTM LAAVDDDHAA LASAFFSAQQ DAGSNAMLNL  180
AFLKGMEEAN KFLPRDIDLL RGSATVLQVK EEAEEEGTAN LGRGRKNLHN WDDVLEANLG  240
RERKMMAPEP EESGEVVDEM IANGFQLFLR EVESLRISMG SEAEKKKSRK GNARSANGVA  300
DLCALLMHCA QAVAMDDRCS AAELLRKIKK HSSPRGDAAQ RLARYFAEGL EARLAGSGSP  360
VYNSLMAKRT SVVDFLKAYR LYAAACCFRM MAFKFANLTI SKAIAGRKKP GFRPAARVKE  420
TGRRLSSYAS QFGVPFKYRG IAAKWETVGV DDLDIDPDEV LIVNSILHFG NLMDEGVDMS  480
SPSPRDVVLS NIRKMRPDVF ILFIMNGTYS SPYFVPRFRE ALFHYSAMFD MMDATTPRDS  540
DLRVLVERDL FGQCAQNVIA CEGLDRVERP ETYKKWQLRN HRAGLRQLSL DPDIVKAVQE  600
SVRDKFHEDF VTDVDLQWLL GGWKGRILYA MSTWAAADAI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2330863425378Protein SCARECROW
5b3h_A2e-2330863424377Protein SCARECROW
5b3h_D2e-2330863424377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.89180.0leaf| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G229700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316530.10.0scarecrow-like protein 34
RefseqXP_021316531.10.0scarecrow-like protein 34
TrEMBLC5Y8L50.0C5Y8L5_SORBI; Uncharacterized protein
STRINGSb05g027770.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2543445
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-115GRAS family protein