PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G226100.1.p | ||||||||
Common Name | Sb05g027450, SORBIDRAFT_05g027450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 184aa MW: 19354 Da PI: 10.2288 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00028 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F++ L H +H Sobic.005G226100.1.p 58 FRCKTCGRAFPTFQALGGHRTSH 80 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 10.6 | 0.0018 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C +F++ L H+r+H Sobic.005G226100.1.p 108 HRCTTCAAVFPTGQALGGHMRRH 130 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.2E-11 | 57 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.29E-5 | 58 | 130 | No hit | No description |
PROSITE profile | PS50157 | 10.097 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.7E-12 | 107 | 132 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.093 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.683 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MATTTTERPT ATASNHTQLL RLYLSLSTTA SKVIAKKQHG GVICSHQQQQ HRAGGGAFRC 60 KTCGRAFPTF QALGGHRTSH KRPLVRAHGL DLLLGARPGK GAAATDVHRC TTCAAVFPTG 120 QALGGHMRRH RAAAAAAAFD FNVAVHGESE TAARVAVDAC LSGEMQDESE DDVAGPIRLF 180 KFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G226100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134045 | 9e-33 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. | |||
GenBank | AK062491 | 9e-33 | AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence. | |||
GenBank | AK105226 | 9e-33 | AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence. | |||
GenBank | AP014967 | 9e-33 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY305866 | 9e-33 | AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds. | |||
GenBank | CP012619 | 9e-33 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. | |||
GenBank | CT833322 | 9e-33 | CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451308.1 | 1e-131 | zinc finger protein ZAT11 | ||||
TrEMBL | C5Y8H8 | 1e-129 | C5Y8H8_SORBI; Uncharacterized protein | ||||
STRING | Sb05g027450.1 | 1e-130 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 2e-21 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G226100.1.p |
Entrez Gene | 8076353 |