PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G225700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 230aa MW: 24806.7 Da PI: 9.2772 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F++ L H +H Sobic.005G225700.1.p 127 FECQTCGRRFPTFQALGGHRTSH 149 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00054 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cg Fs+ L H+r+H Sobic.005G225700.1.p 169 HACATCGLGFSTGQALGGHMRRH 191 67********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.2E-7 | 126 | 191 | No hit | No description |
Pfam | PF13912 | 1.0E-11 | 126 | 151 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.1E-9 | 168 | 192 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 169 | 191 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.536 | 169 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 171 | 191 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSSRIKRARD GDDDDDDAIS RGSAIVVDVP HHGEDDDDIH VVDEEEEEDQ RRRRRAACHV 60 LLSLSLSCRS SSSTSSPSTS CSIQDDQAAA ATGTGTGTGI APPPPLKLIK RRRRRRRRRG 120 LQVDDVFECQ TCGRRFPTFQ ALGGHRTSHL RRPAATKKPP QSSKAVLVHA CATCGLGFST 180 GQALGGHMRR HRLGRADSVG SGDVDLTQII VHGRPTSASS SLQLLNLFV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 111 | LKLIKRR |
2 | 109 | 114 | KRRRRR |
3 | 110 | 118 | RRRRRRRRR |
4 | 111 | 118 | RRRRRRRR |
5 | 112 | 118 | RRRRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G225700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317868.1 | 1e-162 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A1Z5RL32 | 1e-161 | A0A1Z5RL32_SORBI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G225700.1.p |