PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G224700.1.p | ||||||||
Common Name | Sb05g027360, SORBIDRAFT_05g027360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 24088.1 Da PI: 6.4998 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 33 | 75 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 gr +++E+ l ++++ ++G+ W++Iar+++ gRt++++k++w + Sobic.005G224700.1.p 33 GRLSQQEERLVIELHSRWGNS-WSRIARRLP-GRTDNDIKNYWKT 75 7889***************99.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.344 | 12 | 26 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-7 | 12 | 39 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.9E-19 | 12 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.397 | 27 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 31 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-13 | 33 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.92E-11 | 36 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-18 | 40 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDRGGGHATG LNRSGKSCRM RWVNYLHPSR KHGRLSQQEE RLVIELHSRW GNSWSRIARR 60 LPGRTDNDIK NYWKTRMRMK AQERETSMSP SSLTTYTSCL LDSNSPVDVM SCGDTHNNFS 120 SCIIGSALES TRTVDDGFVM DQIWREMETP LQAPALPQVI HQADEKTCSS IVPLCTPATT 180 AAMWDDQCPE VFWNMDAEEI RMLAPQFDCA ES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-16 | 13 | 81 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-16 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-16 | 13 | 81 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G224700.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021316575.1 | 1e-159 | myb-related protein MYBAS1 isoform X2 | ||||
Swissprot | Q53NK6 | 2e-69 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A1B6PU49 | 1e-158 | A0A1B6PU49_SORBI; Uncharacterized protein | ||||
STRING | Sb05g027360.1 | 1e-147 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 1e-48 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G224700.1.p |
Entrez Gene | 8086015 |
Publications ? help Back to Top | |||
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