PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.005G217400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18172.6 Da PI: 9.482 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.1 | 2.5e-14 | 14 | 59 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 + GVr ++ +g ++AeIrd + +g +r++lg+f+tae Aa a+++a+ Sobic.005G217400.1.p 14 FIGVRPRP-WGTFAAEIRDSTRRG--ARVWLGTFDTAEAAALAYDQAAF 59 67***999.**********43343..*********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.9E-25 | 13 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.941 | 13 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-8 | 14 | 25 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-19 | 14 | 73 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.24E-12 | 14 | 48 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-25 | 14 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-10 | 15 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-8 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MTDDASSRGA TAFFIGVRPR PWGTFAAEIR DSTRRGARVW LGTFDTAEAA ALAYDQAAFA 60 APGAAAVFNF PVDCVRESLA PLELAATLGS PVLALKRRHC KRKHRRRRRR KSSSSSRSSP 120 LPSSNVSMAA PPQQQVISQC CSSIIELEDL GADYLDELLR VSCESTTG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-23 | 4 | 71 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 95 | 110 | KRRHCKRKHRRRRRRK |
2 | 96 | 102 | RRHCKRK |
3 | 101 | 109 | RKHRRRRRR |
4 | 104 | 110 | RRRRRRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.005G217400.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317856.1 | 6e-74 | ethylene-responsive transcription factor ERF094 | ||||
Swissprot | Q8VYM0 | 4e-43 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A1Z5RJV2 | 1e-118 | A0A1Z5RJV2_SORBI; Uncharacterized protein | ||||
STRING | Sb05g026843.1 | 1e-66 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31230.1 | 4e-20 | ethylene-responsive element binding factor 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.005G217400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|