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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.005G209200.1.p |
Common Name | Sb05g026270, SORBIDRAFT_05g026270 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
GRAS |
Protein Properties |
Length: 622aa MW: 70830.3 Da PI: 6.2885 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.005G209200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 285 | 2.1e-87 | 241 | 612 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
++lL++cA+a++++d + +++lL++++++as +gd++qRla++f+ +L+ar+++s+s+l + l + s +e l+a+klfsev+ +
Sobic.005G209200.1.p 241 RRLLISCAQALAADDDKTTRELLKQIQQHASATGDATQRLAHCFAMGLEARIVGSGSQLLQRLMLEYPS---AIEFLKAYKLFSEVCCF 326
789**********************************************************99999998...9**************** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp.f 176
++++++ +I++a++g++r+Hi+D++ G+QW+ Ll+ Las+++g p+++iT++++p++ e++e++g rL+k A+elg+p f
Sobic.005G209200.1.p 327 INVTFIFSAMTIMQAMAGKSRLHIVDYGTRFGFQWAGLLRLLASKKGGLPEVKITAIARPKPMchPGEQIEKIGCRLRKCAHELGLPsF 415
*************************************************************999999*******************66* PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
+f++ ++k++ed + +++++++E+l+V+ +++ l++es+ ++ +rd+vL+ +k+++P+v++ + ++ ++sFl rf +++ y
Sobic.005G209200.1.p 416 KFHT-IMKNWEDTFIIDMHTDSDEVLVVSDMFSFGILMEESLFFDDpsPRDTVLHNIKKMRPDVFIQNVINRSY-GASFLSRFRDTVFY 502
****.7**********************************997776669***************9988888777.789*********** PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
y+alfd+l+a++pr+s+ r +E++llg ++ n ++ceg + +e e++++W+ r ++aG++++pl++++ + +k + k++ + +++
Sobic.005G209200.1.p 503 YMALFDMLDATIPRDSKSRLLLEKVLLGCHAFNSISCEGMDLVEIPEKYKQWQTRNQRAGLRQLPLKSSILNVVKDEVMKHYHKDFMIS 591
**********************************************************************************888**** PP
GRAS 353 eesgslvlgWkdrpLvsvSaW 373
++ ++l++gW++r + + + W
Sobic.005G209200.1.p 592 QDGQWLLQGWMGRVICAHTTW 612
*******************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 622 aa
Download sequence Send
to blast |
MATTPEEFFI MDLMEQPPAS PPVFIDLPQK PNVSNEVRHR VPNDDMMLPY ISHMLMEDDI 60 DDELNNHPAL LQVQQPFAQI LSSHSLGTNT NNSEGANEFL HEGNGDEGAL NSPLSKGTCV 120 LGAYLKGMEE ANMLLHKDND IRRDELVINQ IRESNITDSW VRKRYNRDHL IEEEVRSANK 180 AVTRSKGPEE KHSNEMLDEM MLHSYETCIK GMEHVTMDNS EVEKRNMKSG RIKVARVVDI 240 RRLLISCAQA LAADDDKTTR ELLKQIQQHA SATGDATQRL AHCFAMGLEA RIVGSGSQLL 300 QRLMLEYPSA IEFLKAYKLF SEVCCFINVT FIFSAMTIMQ AMAGKSRLHI VDYGTRFGFQ 360 WAGLLRLLAS KKGGLPEVKI TAIARPKPMC HPGEQIEKIG CRLRKCAHEL GLPSFKFHTI 420 MKNWEDTFII DMHTDSDEVL VVSDMFSFGI LMEESLFFDD PSPRDTVLHN IKKMRPDVFI 480 QNVINRSYGA SFLSRFRDTV FYYMALFDML DATIPRDSKS RLLLEKVLLG CHAFNSISCE 540 GMDLVEIPEK YKQWQTRNQR AGLRQLPLKS SILNVVKDEV MKHYHKDFMI SQDGQWLLQG 600 WMGRVICAHT TWVANEDTSS E*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF184905 | 0.0 | KF184905.1 Saccharum hybrid cultivar R570 clone BAC 149L06 complete sequence. |