PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G208950.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 455aa    MW: 50147.1 Da    PI: 8.2829
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G208950.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.84.1e-212393422108
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           ++lL++cA+a++++d+  a++lL++++++as +gd++qRla yf ++L++r+++++s+l + l  +  s   ++e l+a+ l+se++ +
  Sobic.005G208950.1.p 239 RRLLISCAQALAADDHMTARELLKQIKQHASATGDATQRLAYYFSKGLESRILGTGSQLWQLLMLEYPS---VVELLKAYILYSEACCF 324
                           789*********************************************************999999888...9**************** PP

                  GRAS  91 lkfshltaNqaIleaveg 108
                           ++++++    +Il+a++ 
  Sobic.005G208950.1.p 325 VNVTFIFSAMTILQAMAA 342
                           ***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.207212454IPR005202Transcription factor GRAS
PfamPF035141.4E-18239342IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGTTPEEFFI KDLMEQPPSS PPVFLDLSQK PNVSSEVRHH VPNNDMMLPY ISRMLMEDNI  60
DDELTDHPAL LQVQQPFAQI LSSPSFGTNT NNSEGPNDFL CGGHGDKSAP NSPVSKGTYI  120
VGESLKDLEE ANTLLPKDNN IRRNELVNQI RDSNIIDSRV KKRYNNDNLL EEEVRTTNKA  180
VMMINDLEEK GGSKFLDKMM LHAYETCIKG MERVTIDVEK RNRKSRRIKV TRNNGVDIRR  240
LLISCAQALA ADDHMTAREL LKQIKQHASA TGDATQRLAY YFSKGLESRI LGTGSQLWQL  300
LMLEYPSVVE LLKAYILYSE ACCFVNVTFI FSAMTILQAM AARRPPPSAQ ATSRLSVRRG  360
AAVPSLVADL IQQAHHVAAP TSTTMHGRLP DSSSTCSARG PPHAASRSFE SQPAAQPPYQ  420
LSVALRTMVT SVSSRSTSPS SAPLLGGRPA CRPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G208950.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849050.0KF184905.1 Saccharum hybrid cultivar R570 clone BAC 149L06 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317849.10.0scarecrow-like protein 14
TrEMBLA0A1Z5RJY50.0A0A1Z5RJY5_SORBI; Uncharacterized protein
STRINGSb05g026245.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4140623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-24GRAS family protein