PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G204600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 380aa MW: 41804 Da PI: 6.5537 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.9 | 2.4e-22 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skRr gilKKA+ELS+LCd++ +++fs+tgk Sobic.005G204600.1.p 9 KRLENSSGRQVTYSKRRSGILKKAKELSILCDIDLILLMFSPTGK 53 789****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.006 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.46E-26 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-19 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MGRVKLKIKR LENSSGRQVT YSKRRSGILK KAKELSILCD IDLILLMFSP TGKPTICIGE 60 RSNIEEVIAK YAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSG GQTVEELSGH 120 LGSLQCQMAE VQKRLSYWSD PEKVENIDHI RAMEQSLKES LNRIQIHKEN FAKQHLIGLQ 180 CAAAQFQTDM QLPLGLTGEP GPSSWFQNGG ADGQQAMMLP DDSSLLHQRD IAGCSTSTSL 240 PGYPGYFSMT KQETDTGGGS EHAGQAAVHQ QPPPPPPDFS QAECLTSLHL GAQFPYAPCF 300 DHPSLFNDRM FRPDAVELHD GSAGMDFGGG HFDLPRPGDE ASFQNWASAA ACGAAMFDHH 360 HQQQQHHQQS QSSSAQQQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-13 | 1 | 96 | 1 | 94 | MEF2C |
5f28_B | 1e-13 | 1 | 96 | 1 | 94 | MEF2C |
5f28_C | 1e-13 | 1 | 96 | 1 | 94 | MEF2C |
5f28_D | 1e-13 | 1 | 96 | 1 | 94 | MEF2C |
6byy_A | 9e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 9e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 9e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 9e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G204600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317428.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X2 | ||||
Swissprot | Q7X9I0 | 4e-90 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A1B6PTQ0 | 0.0 | A0A1B6PTQ0_SORBI; Uncharacterized protein | ||||
STRING | Sb05g025970.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 | Representative plant | OGRP5946 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 4e-82 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G204600.1.p |
Publications ? help Back to Top | |||
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