PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G188000.1.p
Common NameSb05g024550, SORBIDRAFT_05g024550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 372aa    MW: 41340.2 Da    PI: 5.4866
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G188000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.3e-51221521129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhP+d e+v++yL++kv++ +l+  ++++evd+ k+ePw+Lp k+k +ekewyfF  +d+ky+tg r+nratk+gyWkatgkd
  Sobic.005G188000.1.p  22 LPPGFRFHPSDYEIVSHYLTNKVRNMDLTY-TAFEEVDLKKTEPWNLPIKAKWGEKEWYFFYLKDRKYSTGLRANRATKAGYWKATGKD 109
                           79*************************999.88***************98999************************************ PP

                   NAM  90 kevlsk...kgel..vglkktLvfykgrapkgektdWvmheyrle 129
                           kev+++      +  vg+kktLvfykg+ap+g kt+Wvmheyrle
  Sobic.005G188000.1.p 110 KEVYNTiegV--VvlVGMKKTLVFYKGKAPRGDKTNWVMHEYRLE 152
                           *****86433..2559***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-5614193IPR003441NAC domain
PROSITE profilePS5100555.2122193IPR003441NAC domain
PfamPF023651.5E-2623151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MADQQQPQQK GMNTVHAGGL DLPPGFRFHP SDYEIVSHYL TNKVRNMDLT YTAFEEVDLK  60
KTEPWNLPIK AKWGEKEWYF FYLKDRKYST GLRANRATKA GYWKATGKDK EVYNTIEGVV  120
VLVGMKKTLV FYKGKAPRGD KTNWVMHEYR LEGSNSLSSP ASTSNSADNV VTTMKASASA  180
FKDEWVVCRV FEKTIGIKKT TAPAYQVAMD GAEIDQRNIN PTIPIPMPVQ LPLSMSMPMQ  240
FPSLPDFTMD LMPPCYPNTS AEMSPMVGIG GGLQINDALF DNSIAALPQM NFYNQMGMEA  300
TADQMDMGVV ADQMGKGGGF DVAMLESRPS SMVLERDEQA NATEISSMLS MTGLGSVTTT  360
IEMNDTWKYK Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-472019915171NO APICAL MERISTEM PROTEIN
1ut4_B3e-472019915171NO APICAL MERISTEM PROTEIN
1ut7_A3e-472019915171NO APICAL MERISTEM PROTEIN
1ut7_B3e-472019915171NO APICAL MERISTEM PROTEIN
3swm_A4e-472019918174NAC domain-containing protein 19
3swm_B4e-472019918174NAC domain-containing protein 19
3swm_C4e-472019918174NAC domain-containing protein 19
3swm_D4e-472019918174NAC domain-containing protein 19
3swp_A4e-472019918174NAC domain-containing protein 19
3swp_B4e-472019918174NAC domain-containing protein 19
3swp_C4e-472019918174NAC domain-containing protein 19
3swp_D4e-472019918174NAC domain-containing protein 19
4dul_A3e-472019915171NAC domain-containing protein 19
4dul_B3e-472019915171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G188000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317539.10.0NAC domain-containing protein 48
TrEMBLA0A1B6PTE40.0A0A1B6PTE4_SORBI; Uncharacterized protein
STRINGSb05g024550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.28e-69NAC domain containing protein 80