PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G180400.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

M-type_MADS

Protein Properties

Length: 176aa MW: 19830.9 Da PI: 9.5015

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G180400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37	4.4e-12	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r t+ + + + KKA+EL +LC+++ +v+++++ Sobic.005G180400.1.p 11 ISNDSTRRATYKRCSESLEKKASELTTLCGIKLCVVVYGQ 50 9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.736	1	50	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-10	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.08E-19	2	62	No hit	No description
SuperFamily	SSF55455	5.62E-17	3	92	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.0E-12	11	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MARKKVNLQW ISNDSTRRAT YKRCSESLEK KASELTTLCG IKLCVVVYGQ GEAQPKVWPS 60 NEEAKDLLMK FNRRLDVSSL KKTKNQEEFL QSRSLKLHEQ HETLDLLHDS MVGGRPGFIG 120 TDKGELLSLK DMVDMKMRKI EARLQQLAVG EEVLPQPLPQ DSYNLGACSR LPSAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G180400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317822.1	1e-91	agamous-like MADS-box protein AGL80
TrEMBL	A0A1Z5RK89	1e-126	A0A1Z5RK89_SORBI; Uncharacterized protein
STRING	Sb05g023915.1	1e-116	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202
Representative plant	OGRP114	13	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	1e-20	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Sobic.005G180400.1.p