PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G180200.1.p | ||||||||
Common Name | Sb05g023915, SORBIDRAFT_05g023915 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 20935.3 Da PI: 9.2624 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.4 | 1.4e-11 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+ r t+ + + + KKA+EL +LC+++ +v+++++ Sobic.005G180200.1.p 11 ISNDATRRATYKRCSKSLEKKASELTTLCGIKLCVVVYGQ 50 99************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.6E-9 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.587 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.78E-18 | 4 | 62 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-16 | 4 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-11 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAHKKVNLQW ISNDATRRAT YKRCSKSLEK KASELTTLCG IKLCVVVYGQ GEAQPKVWPS 60 NEEAKDLLMK FNRRLDVSCL KKTKNQEEFL QSRSLKLHEQ VSKLDLENRE HETLDLLHDS 120 MVGGRPGLVG SNKGELLSLR DMVDMKMRKI EARLQQLAVG EEVLPQPLPQ DSYNLGACSM 180 LPSAK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G180200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317822.1 | 2e-99 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1B6PT92 | 1e-133 | A0A1B6PT92_SORBI; Uncharacterized protein | ||||
STRING | Sb05g023915.1 | 1e-131 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 3e-21 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G180200.1.p |
Entrez Gene | 8066699 |