PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G180100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26604.3 Da    PI: 8.6244
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G180100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.7e-131150342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          i+n+  r  t+ +R + + KKA+EL +LC+++ +v++++ 
  Sobic.005G180100.2.p 11 ISNNATRRATYKRRYQSLVKKASELTTLCGTNMCVVVYAD 50
                          99************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.544161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-12160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-18182IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-7323IPR002100Transcription factor, MADS-box
CDDcd002664.96E-19371No hitNo description
PfamPF003192.0E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVRKKVNLQW ISNNATRRAT YKRRYQSLVK KASELTTLCG TNMCVVVYAD SKAQPDVSPS  60
DEEAKKLLKK FKDMPNVDSL KKTQSQAEFL QRRTFKLHEE TSKLDQENRE RETLVLLHDS  120
LDGHRPGLVG TTKDELLSLK EIVEMKMNKA KARIEQLVGG KEALPDPFQV MLPVSSSSQT  180
QASSYTYNEM QIMVPLEEHQ MQKDWPLASL LEANYGELGT ALYDGFVGSS RDTSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G180100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317823.11e-175agamous-like MADS-box protein AGL80
TrEMBLA0A1Z5RJ841e-175A0A1Z5RJ84_SORBI; Uncharacterized protein (Fragment)
STRINGSb05g023912.11e-158(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.27e-21M-type_MADS family protein