PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.005G180000.1.p

Common Name

Sb05g023910, SORBIDRAFT_05g023910

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

M-type_MADS

Protein Properties

Length: 256aa MW: 28441.5 Da PI: 9.7581

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.005G180000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34	3.8e-11	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+ r t+ + + + KKA+EL +LC+++ +v++++ Sobic.005G180000.1.p 11 ISNNATRRATYKRCYKSLAKKASELTTLCGTNMCVVVYGD 50 999***********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.62E-17	1	79	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.806	1	50	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.7E-9	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.58E-19	2	77	No hit	No description
Pfam	PF00319	7.6E-11	11	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MARKKVNLQW ISNNATRRAT YKRCYKSLAK KASELTTLCG TNMCVVVYGD GKAQPEVWPS 60 DEEAKKLLKK FKDMPNLGSL KKTQSQAEFL QSRTFKLHEQ TSKLDQENRE RETLGLLHDR 120 LDGRRPGLVG TSKDELISLG EIVEIKMTKA KARIQQLVGR QGSLPDPFQV MPPVSSSLQT 180 QASSYTYNKM QITAPLEEHL QQQDWPLASQ LAPNYGELGS ALYDGFVGSS RDPSGSGCPM 240 MQPYNLGFSS GLPRP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.005G180000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317894.1	0.0	agamous-like MADS-box protein AGL80
TrEMBL	A0A1B6PT95	0.0	A0A1B6PT95_SORBI; Uncharacterized protein
STRING	Sb05g023910.1	1e-180	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202
Representative plant	OGRP114	13	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	6e-22	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Sobic.005G180000.1.p
Entrez Gene	8074374