PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G177800.4.p | ||||||||
Common Name | Sb05g023730, SORBIDRAFT_05g023730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27113.1 Da PI: 6.4021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.8 | 5.2e-05 | 41 | 90 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + +++L Sobic.005G177800.4.p 41 KKTHKAEREKLKRDQLNDLFVELGSMLDLD----RQNTGKATVLGDAARVLRDL 90 678899********************9886....56677888888877777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-11 | 37 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-9 | 37 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.988 | 40 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0032 | 46 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MVADTESADS LPGSSNAASE TPAHGLASKS IHQKSQENPS KKTHKAEREK LKRDQLNDLF 60 VELGSMLDLD RQNTGKATVL GDAARVLRDL ITQVESLRKE QSALVSERQY VSSEKNELEE 120 ENNSLKSQIS ELQNELCTRL RNSSLNQNSL GMSLPVANTV GPDLATHPMP QQIWSNIPNL 180 SSVSMAHPTN AATLLHSRDH SADAGQGYAP QPRELQLFPG QLCLSLPQSS QEGSSSGVVP 240 RSRKEQRNG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G177800.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039027 | 1e-143 | BT039027.1 Zea mays full-length cDNA clone ZM_BFb0351N03 mRNA, complete cds. | |||
GenBank | BT088171 | 1e-143 | BT088171.1 Zea mays full-length cDNA clone ZM_BFc0043H09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021317140.1 | 1e-155 | transcription factor bHLH11 isoform X1 | ||||
TrEMBL | A0A1Z5RJ47 | 0.0 | A0A1Z5RJ47_SORBI; Uncharacterized protein | ||||
STRING | Sb05g023730.1 | 1e-150 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G177800.4.p |
Entrez Gene | 8066689 |