PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G162400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 131aa MW: 14686.8 Da PI: 10.202 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 42.1 | 1.2e-13 | 82 | 116 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C+nC+ ++ Tp++Rrgp g k CnaCGl ++ + Sobic.005G162400.2.p 82 CANCRESSevTPQMRRGPTGAKNFCNACGLAWATY 116 ********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.5E-6 | 76 | 129 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.47E-7 | 79 | 116 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-11 | 81 | 115 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.34E-8 | 81 | 116 | No hit | No description |
Pfam | PF00320 | 1.7E-11 | 82 | 116 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 82 | 109 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MDKKDFNLNI WHQVPPIVVP QNFDRATAMS RYLKKRKSTM KADYSVRREI ALRITRRGGK 60 FAPSEKNSEN SVGTEAAELQ FCANCRESSE VTPQMRRGPT GAKNFCNACG LAWATYVSAP 120 ISHSFIYHSL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G162400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450996.2 | 3e-72 | GATA transcription factor 18 | ||||
TrEMBL | A0A1Z5RJ01 | 3e-94 | A0A1Z5RJ01_SORBI; Uncharacterized protein | ||||
STRING | Sb05g022380.1 | 8e-71 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15880 | 12 | 13 | Representative plant | OGRP17885 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 8e-18 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G162400.2.p |