PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G158500.1.p
Common NameSb05g022110, SORBIDRAFT_05g022110
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 320aa    MW: 34181.6 Da    PI: 6.8273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G158500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-17164211555
                   AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           GVr+++ +gr++AeIrd + ng  +r+++g+f+ta+ Aa a+++a+ +++g
  Sobic.005G158500.1.p 164 GVRRRP-WGRFAAEIRDSTRNG--QRVWIGTFDTAQAAALAYDQAAYSMRG 211
                           9*****.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.127161219IPR001471AP2/ERF domain
PRINTSPR003676.6E-7162173IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-20163221IPR016177DNA-binding domain
CDDcd000181.85E-13164220No hitNo description
PfamPF008479.3E-13164211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-27164220IPR001471AP2/ERF domain
SMARTSM003801.6E-28164225IPR001471AP2/ERF domain
PRINTSPR003676.6E-7185201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEQPQFCTAY AHSDGHYGLQ YYDDSLLQPS SAYDDPIAYT GESAGDHYPS SSSTAWASSS  60
GAATPSIHHH HHHQQQQQLH FGGGRVDEHY SYQEDGTGVV DMEQISALMG AACISTNTPA  120
AYSSSASTTT TTTTATMQPS AVHGPSPCGF GHQQKAAADA PLIGVRRRPW GRFAAEIRDS  180
TRNGQRVWIG TFDTAQAAAL AYDQAAYSMR GSAAVLNFPV EHVLESLRAL GIRGDAAGEG  240
DSPPLALKRR HCIRKRLHRN KKATGGKEQK VVATSSHGHD GHAVKLKPKQ QGAAASCVLE  300
LEDLGADYLE ELLATSDRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-261642261779Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G158500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317785.11e-175uncharacterized protein LOC8071942
TrEMBLC5Y4U90.0C5Y4U9_SORBI; Uncharacterized protein
STRINGSb05g022110.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-33ethylene response factor 1