PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G132000.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 815aa    MW: 90493 Da    PI: 6.7653
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G132000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.65e-23111212199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r+++gr +l++GW+ Fv+a++L +gD ++F 
  Sobic.005G132000.2.p 111 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPGRLFLQSGWSVFVSAKRLVAGDAFIFL 198
                           99*****************************7333.34459************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             + +++el+v+v+r+
  Sobic.005G132000.2.p 199 --RGDNGELRVGVRRA 212
                           ..3489999****996 PP
2Auxin_resp102.36.1e-34237319183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a+ha++t+++F+v+Y+Pr+s++eFvv+++++ ++lk+++ +GmRfkm+fe+e+++e+r++Gt+vg  d ++  W +SkWr Lk
  Sobic.005G132000.2.p 237 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYTESLKRNYPIGMRFKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLK 319
                           89******************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-38105240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-41105226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-22109211No hitNo description
SMARTSM010193.4E-24111213IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083111213IPR003340B3 DNA binding domain
PfamPF023623.7E-21111212IPR003340B3 DNA binding domain
PfamPF065071.4E-31237319IPR010525Auxin response factor
PROSITE profilePS5174522.391686770IPR000270PB1 domain
SuperFamilySSF542772.35E-11687762No hitNo description
PfamPF023099.1E-8727770IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MYTELWSLCA GPLVTVPRVG DKVYYFPQGH IEQVEASTNQ VAEQHMQLYN LPWKILCEVM  60
NVELKAEPDN DEVYAQLTLL PESKPEENGS SQEEMPAAPP AALARPRVHS FCKTLTASDT  120
STHGGFSVLR RHADECLPPL DMSRQPPTQE LVAKDLHGVE WRFRHIFRGQ PGRLFLQSGW  180
SVFVSAKRLV AGDAFIFLRG DNGELRVGVR RAMRQQANVP SSVISSHSMH LGVLATAWHA  240
VNTGTMFTVY YKPRTSPAEF VVPCDRYTES LKRNYPIGMR FKMRFEGEEA PEQRFTGTIV  300
GNVDPEQAGW AESKWRYLKV RWDEASSIPR PERVSPWQIE PAVSPPPVNP LPVHRPKRPR  360
SNAVASLAES SAPTKEAAPK VTLETQQHAL QRPLQTQDNA APKSGFGDNS ELDAAHKSAL  420
RPSGFDLEKN TIGMQRKLGS DSWMHMNRPE GYNEMLSGYQ QPNKDVQNPQ GFCSLPDQIA  480
AGRPNFWHTV NAHYQDQQGN HNLFPGSWSM MPSSTGFGLN RQSYPMMQEV GGLSQSATNT  540
KFGNGAYAAL PGHGIDQYSS GWFGHMIPGA RMDDVQPRVI KPQPLVLAHG EAQKMKGNSC  600
KLFGIHLDSP AKSEPLKSPP SVAYDGMPQT PAAAEWRMVD SIEADRCSDP LKMPKQLDAT  660
QVDPVPEKCS QVSRGTQCKS QGGSTRSCKK VHKQGIALGR SVDLTKFNGY TELIAELDEM  720
FDFNGELKGS NKEWMVVYTD NEGDMMLVGD DPWNEFCNMV HKIFIYTREE VQRMNPGTLN  780
SRSEDSLANS MERGSTARET PGSLSASSLD SENC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165434122354Auxin response factor 1
4ldw_A1e-165434122354Auxin response factor 1
4ldw_B1e-165434122354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.6400.0embryo| leaf| ovary| panicle
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G132000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660820.0BT066082.1 Zea mays full-length cDNA clone ZM_BFb0285O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316414.10.0auxin response factor 23-like isoform X2
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLA0A1Z5RID80.0A0A1Z5RID8_SORBI; Auxin response factor
STRINGSb05g019540.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2