PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G132000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 816aa    MW: 90621.1 Da    PI: 6.7653
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G132000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.65e-23112213199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r+++gr +l++GW+ Fv+a++L +gD ++F 
  Sobic.005G132000.1.p 112 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPGRLFLQSGWSVFVSAKRLVAGDAFIFL 199
                           99*****************************7333.34459************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             + +++el+v+v+r+
  Sobic.005G132000.1.p 200 --RGDNGELRVGVRRA 213
                           ..3489999****996 PP
2Auxin_resp102.36.1e-34238320183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a+ha++t+++F+v+Y+Pr+s++eFvv+++++ ++lk+++ +GmRfkm+fe+e+++e+r++Gt+vg  d ++  W +SkWr Lk
  Sobic.005G132000.1.p 238 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYTESLKRNYPIGMRFKMRFEGEEAPEQRFTGTIVGNVDPEQAGWAESKWRYLK 320
                           89******************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-41106227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-38106241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-22110212No hitNo description
SMARTSM010193.4E-24112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083112214IPR003340B3 DNA binding domain
PfamPF023623.7E-21112213IPR003340B3 DNA binding domain
PfamPF065071.4E-31238320IPR010525Auxin response factor
PROSITE profilePS5174522.391687771IPR000270PB1 domain
SuperFamilySSF542772.35E-11688763No hitNo description
PfamPF023099.2E-8728771IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MYTELWSLCA GPLVTVPRVG DKVYYFPQGH IEQVEASTNQ VAEQHMQLYN LPWKILCEVM  60
NVELKAEPDN DEVYAQLTLL PESKQPEENG SSQEEMPAAP PAALARPRVH SFCKTLTASD  120
TSTHGGFSVL RRHADECLPP LDMSRQPPTQ ELVAKDLHGV EWRFRHIFRG QPGRLFLQSG  180
WSVFVSAKRL VAGDAFIFLR GDNGELRVGV RRAMRQQANV PSSVISSHSM HLGVLATAWH  240
AVNTGTMFTV YYKPRTSPAE FVVPCDRYTE SLKRNYPIGM RFKMRFEGEE APEQRFTGTI  300
VGNVDPEQAG WAESKWRYLK VRWDEASSIP RPERVSPWQI EPAVSPPPVN PLPVHRPKRP  360
RSNAVASLAE SSAPTKEAAP KVTLETQQHA LQRPLQTQDN AAPKSGFGDN SELDAAHKSA  420
LRPSGFDLEK NTIGMQRKLG SDSWMHMNRP EGYNEMLSGY QQPNKDVQNP QGFCSLPDQI  480
AAGRPNFWHT VNAHYQDQQG NHNLFPGSWS MMPSSTGFGL NRQSYPMMQE VGGLSQSATN  540
TKFGNGAYAA LPGHGIDQYS SGWFGHMIPG ARMDDVQPRV IKPQPLVLAH GEAQKMKGNS  600
CKLFGIHLDS PAKSEPLKSP PSVAYDGMPQ TPAAAEWRMV DSIEADRCSD PLKMPKQLDA  660
TQVDPVPEKC SQVSRGTQCK SQGGSTRSCK KVHKQGIALG RSVDLTKFNG YTELIAELDE  720
MFDFNGELKG SNKEWMVVYT DNEGDMMLVG DDPWNEFCNM VHKIFIYTRE EVQRMNPGTL  780
NSRSEDSLAN SMERGSTARE TPGSLSASSL DSENC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165434222354Auxin response factor 1
4ldw_A1e-165434222354Auxin response factor 1
4ldw_B1e-165434222354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.6400.0embryo| leaf| ovary| panicle
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G132000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660820.0BT066082.1 Zea mays full-length cDNA clone ZM_BFb0285O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316413.10.0auxin response factor 23-like isoform X1
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLA0A1Z5RIW50.0A0A1Z5RIW5_SORBI; Auxin response factor
STRINGSb05g019540.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2