PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G120600.4.p | ||||||||
Common Name | Sb05g017510, SORBIDRAFT_05g017510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 326aa MW: 34172.1 Da PI: 8.6771 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.3 | 1.6e-41 | 78 | 154 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCe+hsk+pvv+v+g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q+ Sobic.005G120600.4.p 78 CSVDGCRSDLSRCREYHRRHKVCEAHSKTPVVVVAGQEQRFCQQCSRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQH 154 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-34 | 71 | 139 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.342 | 75 | 152 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.01E-39 | 77 | 157 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.9E-31 | 78 | 151 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDWAAASGAP SWGAAATDPG PTMLSFAGPS SSTTPAADAE ARLQDFAAGL AQSARPAGAA 60 GAGRRSRAAG GGAGVEACSV DGCRSDLSRC REYHRRHKVC EAHSKTPVVV VAGQEQRFCQ 120 QCSRFHMLSE FDEGKRSCRK RLDGHNRRRR KPQHDLTNLG GFFPYHQVNQ FEVYPRTIPT 180 VGQNSDAMHL VGRQQPFSIS FSRTPNQFPF PQGGGSTLHA ARPGHLLAEG SSHTGSSTCS 240 NPLSGTLGPE CALSLLSSSL HHPSAAGIPT AGQPQVASSL SRIAAVSQAA TTAMATAFAA 300 GVGHHVFVPD AMFEDPSQAL PFSWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 69 | 151 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 151 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G120600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064694 | 0.0 | BT064694.1 Zea mays full-length cDNA clone ZM_BFb0036O07 mRNA, complete cds. | |||
GenBank | BT065275 | 0.0 | BT065275.1 Zea mays full-length cDNA clone ZM_BFb0077F03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450775.1 | 0.0 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Refseq | XP_021317606.1 | 0.0 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Refseq | XP_021317607.1 | 0.0 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Swissprot | Q2R3Y1 | 1e-100 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | C5Y2L5 | 0.0 | C5Y2L5_SORBI; Uncharacterized protein | ||||
STRING | Sb05g017510.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-42 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G120600.4.p |
Entrez Gene | 8075819 |