PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G117400.2.p | ||||||||
Common Name | Sb05g017130, SORBIDRAFT_05g017130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 226aa MW: 24240.3 Da PI: 9.4548 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.1 | 3.6e-33 | 133 | 191 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+ Sobic.005G117400.2.p 133 LDDGYRWRKYGQKAVKNNNFPRSYYRCTHQGCNVKKQVQRLSRDEGVVVTTYEGTHTHP 191 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-34 | 118 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-30 | 125 | 192 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.113 | 128 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 133 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-27 | 134 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MENYHMLFGA ASTHASSAAT PSSYNFMATA AGTSGGGGGG FHDHDRGQRS SGHGGGGSSS 60 SFFAELSSNN DDSKEYGGAS SPPGPAAGSG RGESSVGPAA AAGEVDRPPK RKGEKKERRP 120 RYAFQTRSQV DILDDGYRWR KYGQKAVKNN NFPRSYYRCT HQGCNVKKQV QRLSRDEGVV 180 VTTYEGTHTH PIEKSNDNFE HILTQMQIYS GMGSTFSSSS HNMFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 124 | 192 | 8 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 124 | 192 | 8 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G117400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728200 | 1e-156 | KJ728200.1 Zea mays clone pUT6475 WRKY transcription factor (WRKY108) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002449513.1 | 1e-167 | probable WRKY transcription factor 75 | ||||
TrEMBL | C5Y2H7 | 1e-166 | C5Y2H7_SORBI; Uncharacterized protein | ||||
STRING | Sb05g017130.1 | 1e-167 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 8e-55 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G117400.2.p |
Entrez Gene | 8075807 |