PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G106366.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | FAR1 | ||||||||
Protein Properties | Length: 473aa MW: 55796.9 Da PI: 9.9041 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.5 | 1e-13 | 36 | 125 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fYn Y+ evGF v+ ++s+ + +++ ++++ +e +++ +++r t+ ++r+gC ak+++ +++d w+++ ++eHn Sobic.005G106366.1.p 36 EFYNMYSWEVGFGVKFNSSRPGpksSAKNTENAEQYRSMQEIVCQKSG---NDSRITTGTKRCGCPAKIRLLRTDDYGWYISLHVKEHN 121 6***************99986632233333344445444444444444...45888999****************************** PP FAR1 87 Hela 90 Hel+ Sobic.005G106366.1.p 122 HELS 125 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-10 | 36 | 125 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.3E-29 | 247 | 340 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MGTIERAMRS APTRKTEHIF EPEVGLVFDS REEAREFYNM YSWEVGFGVK FNSSRPGPKS 60 SAKNTENAEQ YRSMQEIVCQ KSGNDSRITT GTKRCGCPAK IRLLRTDDYG WYISLHVKEH 120 NHELSRTNGE KREWNSHRQI DPSMKEMIRN LRLNNVSLTR VHCIMGDVYG TSADVPWTKK 180 SLRTICSQIT RDQMGDDIKK TMDIFREMHE ADPGFRFSVE LDKHSRIRTL LWCSGRGREQ 240 YACFGDVVTF DTTYCTNIYK MPFGLFVGVN HHFQTTIFAG VLMRRETARS FKWVFKEFLN 300 LMGGKAPFTI LTDQCKAMAK AIRFVMPSTY HLWCKWHVMK RIRECLGPLY TKNKKFRDDF 360 WLVVNGMLTE DEFERAWDDL VTRYNLQKNS FMNRIYKSKK KWAKPWSKDK FCARMSSTQR 420 SESANFMLKR YVPRNSSMNH FVSQYNRMLY EREREEDIAE DKTKQFDVIL RN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G106366.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197126.1 | 1e-169 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1Z5RIX1 | 0.0 | A0A1Z5RIX1_SORBI; Uncharacterized protein | ||||
STRING | Sb05g009983.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-65 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G106366.1.p |