PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G104800.1.p | ||||||||
Common Name | Sb05g009460, SORBIDRAFT_05g009460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 29659 Da PI: 10.2803 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Sobic.005G104800.1.p 20 RGHWRPGEDEKLKQLVEKYGPQNWNSIAEKLD-GRSGKSCRLRWFNQ 65 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 62.5 | 8.6e-20 | 73 | 116 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eE+e+l++a++ +G++ W++Iar+++ gRt++ +k++w+ + Sobic.005G104800.1.p 73 RPFTEEEEERLLNAHRAHGNK-WALIARHFP-GRTDNAVKNHWHVV 116 69*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.772 | 15 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-30 | 18 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 19 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-17 | 20 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-27 | 21 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.29E-14 | 23 | 64 | No hit | No description |
PROSITE profile | PS51294 | 28.188 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-17 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-17 | 72 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.43E-14 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 74 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MPSSSTTNTS DGAKSSSCPR GHWRPGEDEK LKQLVEKYGP QNWNSIAEKL DGRSGKSCRL 60 RWFNQLDPRI NKRPFTEEEE ERLLNAHRAH GNKWALIARH FPGRTDNAVK NHWHVVMARR 120 SRERSRLLAR AASSAASSPS AGGYLFGAGT PATSSLCFGF SKLGGGGSGG GLFSSPAASP 180 PTSLFKSFGT ATGSKGFLGA SFEASGRYNY SGKQLTAPLS ITFASPSEAL GMDIGHHGRH 240 EHHQKDYHAA SGDSADEPLK KKDVPFIDFL GVGVSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-31 | 20 | 120 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-31 | 20 | 120 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G104800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065675 | 0.0 | BT065675.1 Zea mays full-length cDNA clone ZM_BFc0014F11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450672.1 | 0.0 | transcription factor MYB3R-3 | ||||
TrEMBL | C5Y1Y9 | 0.0 | C5Y1Y9_SORBI; Uncharacterized protein | ||||
STRING | Sb05g009460.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-60 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G104800.1.p |
Entrez Gene | 8071726 |