PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G100400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 850aa    MW: 89147.8 Da    PI: 9.6493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G100400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00086206228123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y C dC++ F + + L  H+r+H
  Sobic.005G100400.1.p 206 YACADCSMAFGQEMVLCGHMRSH 228
                           89********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-4204230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.27206228IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055206233IPR007087Zinc finger, C2H2
PROSITE patternPS000280208230IPR007087Zinc finger, C2H2
PfamPF139121.4E-5493519IPR007087Zinc finger, C2H2
SMARTSM003559494517IPR015880Zinc finger, C2H2-like
SMARTSM0035511536559IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MDSNQKPLPS PPPLPPPPPP PPPPPKKGNT RGCPPLVSAR LHDGDTVGVG DTEAAALCRG  60
SPCVSHHELS GSGSHGLSRS SSHELSGSGR RVEGKAEAPI EQCGSPPQCS HEVARLGSSY  120
HELSGSSRHE LSRSGRHELS GSSHHELSES GHRLEGTTSS RSLVGYPGRD KPTAKQRGLP  180
RQHSHVVARF GLAGLGTVAT VDDQPYACAD CSMAFGQEMV LCGHMRSHKH DHLSSDSEED  240
APTSKRRKKQ NSKMRTVKPL DATWGNHALH NRFPRVAPTK VKKSGSESNV TIRNIVVTMH  300
DNNKVRENDS SGDDIPVIVM GSRGAPGLAP NAVAALSMAP APAVAVATPM PTPHPTAAFV  360
NTEATPAATS MAGMTIPRAP ASVAAVTITR APLATAMSAA TQTAPDLVKR NNGSGQATAH  420
SKYDSNGKVV ARNNNSCGKS LVGYGNIDYG EGVSGYSNGD YGGKGVAGCG SGSHTYSTST  480
TAGGESSKGC GKVYNCSKCK NRFFSTPQAL GGHTSSHHKI REKKGKAKLD SQSGLHKCKV  540
CKHVRRTAQE LSFHMKIVHP NHAVAAAASG KEKPFKATWT NNIDAALYGP YNTMGWQIPA  600
GAPRSAMLSL LASMAPVHQP PQGTMAMSGN PMTGHFSAAN TSTGWSLGTT SSILLATPLH  660
NQEQNPPEQI AVVDGHRSIN PAFFSFSRRQ ESAVVPGNAI ASSSSTPRPD NATAIDAPAN  720
TMSRRLPFFL TGRSAIHAPP VSMPVHQPTQ GMTAMAGNPV TGHFPAAMAG DWYSFPATTS  780
SVLPAIPLQT QAENPPQGRV VPANELEDTS QNEAENPPEQ TVPGNNGGRT IRLFGFNIAE  840
AWKEVKEPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G100400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317664.10.0uncharacterized protein LOC110435890
TrEMBLA0A1B6PRF10.0A0A1B6PRF1_SORBI; Uncharacterized protein
STRINGGRMZM2G359589_P011e-123(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1867479
Representative plantOGRP1978122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.13e-07C2H2 family protein