PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G100200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 978aa    MW: 103622 Da    PI: 7.4216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G100200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05176198123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C dC+++F r   L  H+r+H
  Sobic.005G100200.2.p 176 YTCADCSMTFGRETALCGHMRLH 198
                           9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.77E-5172204No hitNo description
Gene3DG3DSA:3.30.160.601.5E-4173198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949176203IPR007087Zinc finger, C2H2
SMARTSM003550.011176198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178200IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001333357IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11335357IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951335362IPR007087Zinc finger, C2H2
PROSITE patternPS000280337357IPR007087Zinc finger, C2H2
SMARTSM0035527561584IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280563584IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 978 aa     Download sequence    Send to blast
MNSNQNPLSS PPPPMPPPPQ PENGNTRGGP PLVSMKLHDE GDGSAIGVGN MESAALRHGS  60
SCASCPELFG SGRQELSRSG RHELSRSSRC HELSRSGHHE LSGSGRHELS RSGRHALSGS  120
SHRLEGTASP RSLVGYPYRD NPTDKHRGLP RRHSRVRARL GLTGLGTVAT VDDRPYTCAD  180
CSMTFGRETA LCGHMRLHNH DHLFYESEED VRGAALHRGS PHASCPELSR SGCHKLSGSG  240
HHELSRSGRH DLSEFGCHEL SRSGCHDLSG SGHHELSGSN HYLEGNASPR SLVGYLGRDK  300
PSTEQHGLPR HHSRVVTRPG LAGLGTIAAV DDRPYTCVDC CMTFGRETAL CGHMRSHKRD  360
HVSSDSEEDS HTPNKRRKKR KSKQRTVMPL EATWGNRASR SGTPRDAPAE VKVSRTESIV  420
TVPNIAAAMH ESNKVIENDD NSDDISVILI DNDDDDDGNP VIAVVGSHGT PSPDSDAAAA  480
LAMAPAPAMA MPTPTPAPHA AAASLNTEGA PAATSAVAVT IPPALASAVA THQALGGHVT  540
SYHRIMEKKG KAKLDLQSGL HMCKVCNHMC QTGHELSFHM ICVHPHLAIA TAAASASSSA  600
NKEKDFVTEG NNIGTAVDGP YNTVGRQIPA SAPTSTILTL PASVAPVHQP PQGMMVMAGN  660
PMTGHFSAAN NSTGWSLLGT TSSILPATPL HNEELNPLEQ IPAIALRNHR HHSISPALFS  720
FPRRQEIAVV PGNAIASSSS TPRPGMEPSQ FIGINNHYAA IHAPANTLGR HLPFFQAGRN  780
HTQASPVSSL VHHPTQGMAM DGNLLTGHFP AATSATGWSF PATTNSVLRS IPLQNQEVNN  840
NVAAIDALAN TMPCLPFFLT GRSAIHAPPM SMPVHQPTQG IVAMAGNPVA GHFPAAMAGD  900
WYSFPATTSS VLPAIPLQTQ EENPPQGRVV PANEVANPSQ NQAENSPEQT VPSNNNGGRT  960
IRLFGTNVVE GQKEDKD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374380KRRKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G100200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5RI380.0A0A1Z5RI38_SORBI; Uncharacterized protein
STRINGGRMZM2G359589_P011e-112(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1867479