PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G095800.1.p | ||||||||
Common Name | Sb05g008290, SORBIDRAFT_05g008290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 30830.3 Da PI: 6.5085 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 45.1 | 3.3e-14 | 13 | 63 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk 49 lppGfrFhP+d+el+ eyL++kv gk ++ ++ + +vd++kvePwdLp+ Sobic.005G095800.1.p 13 LPPGFRFHPRDDELIREYLAPKVFGKIgFSGHRPpMVDVDLNKVEPWDLPT 63 79***********************9876665666**************94 PP | |||||||
2 | NAM | 50.5 | 6.9e-16 | 63 | 105 | 85 | 128 |
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tgkd+ v + +g lvg++ktLvfy+grapkg+kt+Wvmheyr+ Sobic.005G095800.1.p 63 TTGKDRVVEC-HGMLVGMRKTLVFYNGRAPKGSKTEWVMHEYRM 105 5999999999.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.145 | 1 | 130 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.12E-37 | 3 | 130 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-15 | 14 | 105 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MSMSFVCMVE AELPPGFRFH PRDDELIREY LAPKVFGKIG FSGHRPPMVD VDLNKVEPWD 60 LPTTGKDRVV ECHGMLVGMR KTLVFYNGRA PKGSKTEWVM HEYRMMEGSH YQQSSNLSKE 120 DWVLCKVICK KKPGVANFKA SRSLATDGHG TTTASTPPPL QTLMGITLTQ VQAAMAMPRA 180 SLKTTTANSH VQEEIRGTLQ NGASNNIVVD GVQQPSYLPV IADDNNAKGQ PDEMGSYTDP 240 VNCEKDLLTV LLSDLGGEVV PSLPPEMAAS MSSTWMMNHF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-27 | 8 | 131 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-27 | 8 | 131 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-27 | 8 | 131 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-27 | 8 | 131 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-27 | 8 | 131 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-27 | 8 | 131 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-27 | 8 | 131 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-27 | 8 | 131 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G095800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828624.1 | 1e-108 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-41 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1B6PRA9 | 0.0 | A0A1B6PRA9_SORBI; Uncharacterized protein | ||||
STRING | Sb05g008290.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10022 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 6e-44 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G095800.1.p |
Entrez Gene | 8071590 |