PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G052700.1.p
Common NameSb05g004260, SORBIDRAFT_05g004260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 451aa    MW: 48355.1 Da    PI: 9.1535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G052700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05213236123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           ++C dC+++F+  ++L+ H  t H
  Sobic.005G052700.1.p 213 FPCADCDEVFNKAESLELHRATrH 236
                           89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.307213241IPR007087Zinc finger, C2H2
PROSITE patternPS000280215236IPR007087Zinc finger, C2H2
SuperFamilySSF563992.3E-19238449No hitNo description
Gene3DG3DSA:3.90.228.104.0E-13240448IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MPCPPMAASA KKMSRVPDRK KPSRSSSSSS SSSSWVARSM GFYYHSSTTS SSKSRAQATD  60
GKDSNVDKQS NGSSTSKKNK KRSISIGRSL TCAGRSSICS TKESSVMSRD HGDRDRGAAR  120
SASSRSLRAP DVDAVYAAAV SATSSFNSET TAATTAVTTS SSSPLSSALS SPLSSIGGSS  180
FRGVQQIRKL SRCYECHSVF DPRSFAAAAT AAFPCADCDE VFNKAESLEL HRATRHAVSE  240
LGSEDTSRNI VEIIFQSSWL RKQAPVCKIE RILKVQSSER TVKRFEQYKE SIRERASSDQ  300
GPGKKNPRCV ADGNELLRFH CTTFTCSLGL AGTTALCCRS PASAPCNLCS IIRDGFRVDG  360
DGKIATMATS GRAHDMAQVL SDSDKRAMLV CRVVAGRVKK ATSDEKSSED YCDFDSVSSS  420
TEGVYSDLDE LFVFNPRAIL PCFVVIYSGY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G052700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449060.20.0cell wall integrity and stress response component 1
TrEMBLA0A1B6PQ860.0A0A1B6PQ86_SORBI; Uncharacterized protein
STRINGSb05g004260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-84C2H2-like zinc finger protein