PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G051200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 330aa    MW: 33946.7 Da    PI: 8.6951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G051200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20184233255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++aa+++++g
  Sobic.005G051200.2.p 184 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDAAALRFRG 233
                           7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-37184247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-33184243IPR001471AP2/ERF domain
PROSITE profilePS5103225.989184241IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23184243IPR016177DNA-binding domain
PfamPF008474.0E-14184233IPR001471AP2/ERF domain
PRINTSPR003677.6E-12185196IPR001471AP2/ERF domain
CDDcd000187.15E-15192243No hitNo description
PRINTSPR003677.6E-12207223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MELLLLVVVV NVQTRRRGGK HTHRVANAEG GGRGVPPPSR LSAAAGGGDE DDEDGRQEAA  60
AVAAAWRMMS GYERSREASI MVDALTAVVA GGAAAVAPPA ASGRRPVQQV VVLSPAEGQW  120
CSDYYAADVT PPPSARPALT TVHGAEHHGA SGIPATAPAV ASPGSTEQVP SLSSTDSGGT  180
PRRRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDTAEAA ARAYDAAALR FRGSRAKLNF  240
PESATLVSQA LPPRVPPPPP PAPPERPEAL LDFGGGGEGS GAGAASCQSW QQGSSGSPSD  300
GGSGYPSPPP ATWADSGWWP PPPPRDPSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22183241463ATERF1
3gcc_A2e-22183241463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G051200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546648e-84EU954664.1 Zea mays clone 1475648 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450359.11e-118ethylene-responsive transcription factor ABR1
TrEMBLA0A1Z5RGR90.0A0A1Z5RGR9_SORBI; Uncharacterized protein
STRINGSb05g004170.11e-117(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-17ERF family protein