PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G050700.1.p
Common NameSb05g004150, SORBIDRAFT_05g004150
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 695aa    MW: 75483.6 Da    PI: 6.1019
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G050700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.33.1e-27198251155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r+rW  +LH++Fveav+q+ G++ A+Pk+il++m+v+gLt+e+v+SHLQkYR+
  Sobic.005G050700.1.p 198 KQRVRWCGQLHRKFVEAVSQI-GIDSAVPKKILKIMNVEGLTRENVASHLQKYRI 251
                           79*******************.********************************7 PP
2Response_reg79.98.6e-27121211108
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                           vl vdD+++ +++l++ l+  +y ++++++d++ al++l+e++    +Dl++ D+ mp+mdG++ll+ i  e  +lp+i+++a++e ++
  Sobic.005G050700.1.p  12 VLAVDDDRVCLKILERQLKYCNY-NATVVTDARTALDMLRERKdgnqFDLVISDVVMPNMDGFKLLELIGLEM-DLPVIMLSANNETQT 98 
                           799********************.***************99989999**********************6644.8************** PP

                           HHHHHHTTESEEEESS--HHHHH CS
          Response_reg  86 alealkaGakdflsKpfdpeelv 108
                           + + +k Ga d+++Kp+  e+l+
  Sobic.005G050700.1.p  99 IMKGIKHGACDYIVKPVRLEQLR 121
                           ********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1271694IPR017053Response regulator B-type, plant
SuperFamilySSF521728.25E-349130IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-389135No hitNo description
SMARTSM004483.3E-3110124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.3911128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2312121IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.25E-2813121No hitNo description
Gene3DG3DSA:1.10.10.601.0E-28195256IPR009057Homeodomain-like
PROSITE profilePS5129410.808195254IPR017930Myb domain
SuperFamilySSF466891.11E-18196255IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-24198251IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MDADTFPAGL RVLAVDDDRV CLKILERQLK YCNYNATVVT DARTALDMLR ERKDGNQFDL  60
VISDVVMPNM DGFKLLELIG LEMDLPVIML SANNETQTIM KGIKHGACDY IVKPVRLEQL  120
RGIWTHVVKN GKTDPRNTIS SGNDDDVQKL PSGDELPSGD ADKDENIAAN RRKKYSKKNK  180
RIVEVADEDN ENTSAQKKQR VRWCGQLHRK FVEAVSQIGI DSAVPKKILK IMNVEGLTRE  240
NVASHLQKYR IYLKKLGDGT LTNSNSFADE TEALWRNMNV PSFIGSPSSS NHFAKMNSSS  300
TIGAQTLLPT QSIHATSSHK NLGIPRLDME TVGHGVNLPK DVMPMPVQDI SRFVSSGKSY  360
GPVSSDGLPG VSHCFPSGPS GNSFGNVSND VPLKARKPFS IDISGSSFAN SSKDSPPLTS  420
NMCFSLSRSC SSYASILRGK ILGSSRGIPF EDIANGEMLA PGHLPLQSPE LVNQHLVQPQ  480
SCSASLVNKV AREVPQFAGP SNSWKVDVPS RFTNPGHNVG TSEDPSQGNI LKINQLSRHA  540
HSSGQVPTFG NEYQKKITGD MGKAIPVVGF REQVAPFNYG NFSDGNDTHS TLTPIGNSAL  600
ASSSSMRLNQ IDNSAMLTQV LNGGGASDSL HEGSTINQQA VNDQVNNINE FLMGTSEEQN  660
VETDDLDDFL ANLVNQDFID NGDSFIDGDW GFAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-21194256163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.005G050700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450354.10.0two-component response regulator ORR24
TrEMBLC5Y5J40.0C5Y5J4_SORBI; Two-component response regulator
STRINGSb05g004150.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Representative plantOGRP1239536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.16e-82response regulator 12