PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.005G041000.1.p | ||||||||
Common Name | Sb05g003400, SORBIDRAFT_05g003400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 36815.8 Da PI: 6.446 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.4 | 1.3e-40 | 35 | 172 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 l+pGfrF Pt+eel+++yL+++++g++ +e+ i+ vdiy+++P++L++ + ++ ++w+fF++r++++ +g r+ r+t sgyWka Sobic.005G041000.1.p 35 LAPGFRFYPTEEELLTFYLRHRLAGTRPVVEHLIPVVDIYSYHPSELRAmagaASVSDPEQWFFFCPRAERELHGGRPARTTPSGYWKA 123 579************************999888**************8434432223566***************************** PP NAM 86 tgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s+ +++++g k+t+vfy+grap+g+kt W m+ey++ Sobic.005G041000.1.p 124 TGSPSYVYSSsssptaNNRVIGEKRTMVFYQGRAPTGNKTPWKMNEYKA 172 *********98888887888***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-45 | 33 | 201 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.747 | 35 | 202 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-22 | 37 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MRTNGDRGWP AMMMESHGGS GGGGGGGGGG SDPLLAPGFR FYPTEEELLT FYLRHRLAGT 60 RPVVEHLIPV VDIYSYHPSE LRAMAGAASV SDPEQWFFFC PRAERELHGG RPARTTPSGY 120 WKATGSPSYV YSSSSSPTAN NRVIGEKRTM VFYQGRAPTG NKTPWKMNEY KAVADADADD 180 HAPAGAPIML RNEFSVCRVY ISTGTLRSFD RRPHPPSGGL AAVHCGYQRQ QQLQPLLPPP 240 AAAAAAAKTT SLHNQQQTMM LAAVVVDDDS AADNNGRRRH AVEHSHDSSS SGSRGVGGGV 300 DGAEDAATAI DWDWNSLIPP VDDDDLAFTG VDDLTRVIWP HN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-26 | 31 | 200 | 9 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-26 | 31 | 200 | 9 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-26 | 31 | 200 | 9 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-26 | 31 | 200 | 9 | 163 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-26 | 31 | 200 | 9 | 163 | NAC domain-containing protein 19 |
4dul_B | 1e-26 | 31 | 200 | 9 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 30 | SGGGGGGGGGGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.005G041000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002449015.2 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q9FMR3 | 7e-62 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1B6PQ36 | 0.0 | A0A1B6PQ36_SORBI; Uncharacterized protein | ||||
STRING | Sb05g003400.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 4e-59 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.005G041000.1.p |
Entrez Gene | 8070643 |
Publications ? help Back to Top | |||
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